Dear FSL Experts,
I have two group Comparison, Fallowed by TBSS, VBM analysis also created Seed ROI based on VBM output. (example 3 Seed)
Now want to do probabilistic_tracking_with_crossing_fibres, I have done with Bedpostx output, the issue are
1. I am using GUI FDT, "Error Massage:- Could not open Image:- nodif_brain_mask in BEDPOSTX
2.Using Terminal
probtrackx2 -s <basename> -m <maskname> -x <seedfile> -o <output> --targetmasks=<textfile>
I used below step ,
probtrackx2 -s merged_f1samples -m nodif_brain_mask -x 1_VBM_Sphere_mask.nii.gz -o bedpost_ut --targetmasks=<textfile>
Need help in above steps
For general idea my Bedpostx folder contain
bvals
bvecs
data.nii.gz
nodif_brain_mask.nii.gz
and out of BEDPOSTX.bedpostX folder contain
/logs
/xfms
/bvals
/bvecs
/commands.txt
/dyads1.nii.gz
/dyads1_dispersion.nii.gz
/dyads2.nii.gz
/dyads2_dispersion.nii.gz
/mean_dsamples.nii.gz
/mean_d_stdsamples.nii.gz
/mean_f1samples.nii.gz
/mean_f2samples.nii.gz
/mean_fsumsamples.nii.gz
/mean_ph1samples.nii.gz
/mean_ph2samples.nii.gz
/mean_S0samples.nii.gz
/mean_th1samples.nii.gz
/mean_th2samples.nii.gz
/merged_f1samples.nii.gz
/merged_f2samples.nii.gz
/merged_ph1samples.nii.gz
/merged_ph2samples.nii.gz
/merged_th1samples.nii.gz
/merged_th2samples.nii.gz
/BEDPOSTX.bedpostX/monitor
/nodif_brain_mask.nii.gz
how to make it further
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Regards,
SUBRAMONIAM
AIYAPPAN,