Hi Sere,

Thanks for uploading. The output of the option "-a" is "p", rather than "1-p" (yes, the help text is incorrect, or the output should be 1-p also; sorry for that). You can use the option --othresh to save a 1-p image already thresholded, or use fslmaths to convert it to 1-p.

I think this behaviour will be changed for the next patch.

All the best,

Anderson

On 15 July 2014 16:53, sere f <[log in to unmask]> wrote:

Dear Anderson,

I have uploaded 2 files:

dr_stage3_ic0110_tfce_p_tstat1.nii

fdr_ic110_tstat1.nii.gz

Thank you very much!

Serena.

On Tue, Jul 15, 2014 at 5:35 PM, Anderson M. Winkler <[log in to unmask]> wrote:

Hi Serena,

Could you please upload the file dr_stage3_ic0014_tfce_p_tstat1.nii to this link:
https://oxfile.ox.ac.uk/oxfile/work/extBox?id=1648591053059643C8

Thanks

All the best,
Anderson

On 15 July 2014 15:53, sere f <[log in to unmask]> wrote:

Dear FSL users,

I am running fdr on dual regression output :

fdr -i dr_stage3_ic0014_tfce_p_tstat1.nii   --oneminusp -a fdr_ic14_tstat1 -q 0.05

I get 

0.0166

I would like to see fdr_ic14_tstat1 in fslview. 

I set 0.95-1 (min-max) I can not visualize anything because values of  fdr_ic14_tstat1 range 0 to 0.502600.

What is the correct way to visualize  fdr_ic14_tstat1?

Thanks in advance.

Serena.