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Dear Anderson, thank you very much for your help. Serena. On Tue, Jul 15, 2014 at 6:20 PM, Anderson M. Winkler <[log in to unmask] > wrote: > Hi Sere, > > Thanks for uploading. The output of the option "-a" is "p", rather than > "1-p" (yes, the help text is incorrect, or the output should be 1-p also; > sorry for that). You can use the option --othresh to save a 1-p image > already thresholded, or use fslmaths to convert it to 1-p. > > I think this behaviour will be changed for the next patch. > > All the best, > > Anderson > > > > On 15 July 2014 16:53, sere f <[log in to unmask]> wrote: > >> Dear Anderson, >> >> I have uploaded 2 files: >> >> dr_stage3_ic0110_tfce_p_tstat1.nii >> fdr_ic110_tstat1.nii.gz >> >> Thank you very much! >> >> Serena. >> >> >> On Tue, Jul 15, 2014 at 5:35 PM, Anderson M. Winkler < >> [log in to unmask]> wrote: >> >>> Hi Serena, >>> Could you please upload the file dr_stage3_ic0014_tfce_p_tstat1.nii to >>> this link: >>> https://oxfile.ox.ac.uk/oxfile/work/extBox?id=1648591053059643C8 >>> Thanks >>> All the best, >>> Anderson >>> >>> >>> >>> On 15 July 2014 15:53, sere f <[log in to unmask]> wrote: >>> >>>> Dear FSL users, >>>> >>>> I am running fdr on dual regression output : >>>> >>>> fdr -i dr_stage3_ic0014_tfce_p_tstat1.nii --oneminusp -a >>>> fdr_ic14_tstat1 -q 0.05 >>>> >>>> I get >>>> 0.0166 >>>> >>>> I would like to see fdr_ic14_tstat1 in fslview. >>>> I set 0.95-1 (min-max) I can not visualize anything because values of fdr_ic14_tstat1 >>>> range 0 to 0.502600. >>>> >>>> What is the correct way to visualize fdr_ic14_tstat1? >>>> >>>> Thanks in advance. >>>> >>>> Serena. >>>> >>> >>> >> >