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Thanks Mark - really helpful
What you describe is exactly what I am trying to do
I have fieldmaps so have been using those with epi_reg to try and correct for some of the distortion
Some are difficult still though
Are there any DTI specific scripts/programs I can use on the DWI ADC map I have to improve the inferior frontal distortion?
I have looked on the JISC pages and at the FDT/topup pages but cant see anything that might help
Thanks 

Monty