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Thank you Siawoosh! I will ask the Freiburg-team and will also take a look at ACID and the tools from Volkmar Glauche. greetings 2014-05-28 18:43 GMT+02:00 Siawoosh Mohammadi <[log in to unmask]>: > Dear David > > > thanks for the hint. Just that I understood correctly: The > DTI&Fibertools does not have any pre-processing capabilities? > I am not sure whether it has. Just contact Marco Reisert in Freiburg. > > > So normally one should pre-process the raw-data for example by using > ACID, which then writes the estimated diffusion tensor in the format of > the Freiburg tools, correct? > I think it depends on the data you have. There is no general recommended > procedure for dealing with all kinds of diffusion data - not even outside > SPM. For example, you can also use the tools from Volkmar Glauche to do > some of the processing of the diffusion data or another tool outside SPM. > But, I think that when it comes to pre-processing the ACID tools are quite > good. > > Best > Siawoosh > > > -- > Dr. Siawoosh Mohammadi > Post Doctoral Research Fellow > Wellcome Trust Center for Neuroimaging > Institute of Neurology > University College London > 12 Queen Square > London WC1N 3BG > United Kingdom > > Tel. +44-20-344-84368, (internal ext 84368) > Fax. +44-20-7813-1420 > > [log in to unmask] > > ---------- Forwarded message ---------- > From: David Hofmann <[log in to unmask]> > Date: Tue, May 20, 2014 at 1:06 PM > Subject: Re: [SPM] DTI Toolbox for SPM > To: [log in to unmask] > > > Hey Siawoosh, > > thanks for the hint. Just that I understood correctly: The DTI&Fibertools > does not have any pre-processing capabilities? At least I could not find > anything in the manual. So normally one should pre-process the raw-data for > example by using ACID, which then writes the estimated diffusion tensor > in the format of the Freiburg tools, correct? > > greetings > > David > > 2014-05-12 14:56 GMT+02:00 Siawoosh Mohammadi <[log in to unmask]>: >> >> Dear David, >> >> It depends what you mean with "good tools" and what you are interested in. >> >> To my knowledge, there are two major diffusion toolboxes available for >> SPM. >> >> 1. The ACID toolbox - see www.diffusiontools.com >> 2. The tools written by Volkmar Glauches - just tip his name and >> "diffusion and spm" >> >> I can't give you an overview of Volkmar's tools. >> >> The ACID tools mainly focus on the pre-processing of diffusion data (e.g. >> noise, motion, eddy current, susceptibility, patient table vibration >> correction) but also do some tensor fitting. Furthermore, they are >> compatible with the Fibertracking tools from Freiburg and all other tools >> in SPM. >> >> Hope this helps. >> >> Best >> Siawoosh >> >> ---------- Forwarded message ---------- >> From: David Hofmann <[log in to unmask]> >> Date: Sun, May 11, 2014 at 7:30 PM >> Subject: [SPM] DTI Toolbox for SPM >> To: [log in to unmask] >> >> >> Hey @all, >> >> are there any good toolboxes for DTI? And if so, which DTI-toolbox would >> you recommend? >> >> greetings >> >> David >> >> -- >> Dr. Siawoosh Mohammadi >> Post Doctoral Research Fellow >> Wellcome Trust Center for Neuroimaging >> Institute of Neurology >> University College London >> 12 Queen Square >> London WC1N 3BG >> United Kingdom >> >> Tel. +44-20-344-84368, (internal ext 84368) >> Fax. +44-20-7813-1420 >> >> [log in to unmask] > > > > > > -- > Dr. Siawoosh Mohammadi > Post Doctoral Research Fellow > Wellcome Trust Center for Neuroimaging > Institute of Neurology > University College London > 12 Queen Square > London WC1N 3BG > United Kingdom > > Tel. +44-20-344-84368, (internal ext 84368) > Fax. +44-20-7813-1420 > > [log in to unmask] > -- David Hofmann (M.Sc.) Institut für Medizinische Psychologie und Systemneurowissenschaften Von-Esmarch-Strasse 52 48149 Münster Tel: 0251/ 8352794 Mobil: 0152/ 09822352 Email: [log in to unmask] Institute of Medical Psychology and Systems Neuroscience University of Muenster Von-Esmarch-Str. 52 D-48149 Muenster, Germany Phone: +49 (0) 251 - 83 52794 Mobile: +49 (0) 152 - 09822352 E-Mail: [log in to unmask] http://campus.uni-muenster.de/medpsych.html