Dear YukoYou may try using fslswapdim (from fsl) which is a very handy function. Here's how to do it from Matlab command line window, inside an .m file, or if you prefer to use the terminal:system([' fsl4.1-fslswapdim_exe ' input_file ' y z -x ' output_file]);You may choose the orientation by varying (y z -x) to the intended orientation...
Cheers,
-RawiDear SPM experts,I've got anatomical images (T1).Those image orientation flipped, so anterior brain region located in posterior.I wonder if you could have any ideas to fix this wrong image orientation.Any suggestion will be highly appreciated.Thank you so much.Yuko