Hi list,

when I run

convert_xfm -omat fa2freesurfer.mat -concat struct2freesurfer.mat fa2struct.mat

after

tkregister2 --mov $SUBJECTS_DIR/mri/orig.mgz --targ $SUBJECTS_DIR/mri/rawavg.mgz --regheader --reg junk --fslregout freesurfer2struct.mat --noedit

and

flirt -in $SUBJECTS_DIR/Control02/dmri/dtifit_FA.nii.gz -ref struct_brain -omat fa2struct.mat
convert_xfm -omat struct2fa.mat -inverse fa2struct.mat



Could not open matrix file struct2freesurfer.mat
Cannot read concat-matrix

What do you think about it?

Thanks,


Stefano