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Hi,

It looks like it has failed to created a necessary image.
Check to see if any of the initial steps have failed, such as registration or segmentation.
I suspect that the problem will lie there, but we will need more information in order to help solve the problem.

All the best,
Mark


On 24 Apr 2014, at 15:24, wyey0755 <[log in to unmask]> wrote:

 I am trying to run sienax module on T1 dataset. But it shows me following error.  Any help will be appreciated.


Cannot open volume I_stdmaskbrain_pve_1 for reading!

Image Exception : #22 :: ERROR: Could not open image I_stdmaskbrain_pve_1_segperiph

dc: stack empty

dc: stack empty

dc: stack empty

dc: stack empty

Cannot open volume I_stdmaskbrain_pve_0 for reading!

Image Exception : #22 :: ERROR: Could not open image I_stdmaskbrain_pve_0_segvent

dc: stack empty

dc: stack empty

dc: stack empty

dc: stack empty

Image Exception : #22 :: ERROR: Could not open image I_stdmaskbrain_pve_1

dc: stack empty

dc: stack empty

dc: stack empty

dc: stack empty

Image Exception : #22 :: ERROR: Could not open image I_stdmaskbrain_pve_2

dc: stack empty

dc: stack empty

dc: stack empty

dc: stack empty

Image Exception : #22 :: ERROR: Could not open image I_stdmaskbrain_seg

terminate called after throwing an instance of 'RBD_COMMON::BaseException'

Aborted (core dumped)

Image Exception : #22 :: ERROR: Could not open image I_render

Error in slicer input, exiting...


Cannot open grIa.png for reading

Segmentation fault (core dumped)

/bin/rm: cannot remove : No such file or directory

Image Exception : #22 :: ERROR: Could not open image I_stdmaskbrain_pve_1_segperiph

terminate called after throwing an instance of 'RBD_COMMON::BaseException'

Aborted (core dumped)

Image Exception : #22 :: ERROR: Could not open image I_stdmaskbrain_pve_0_segvent

terminate called after throwing an instance of 'RBD_COMMON::BaseException'

Aborted (core dumped)

Image Exception : #22 :: ERROR: Could not open image I_periph_render

Error in slicer input, exiting...


Cannot open grIa.png for reading

Segmentation fault (core dumped)

Image Exception : #22 :: ERROR: Could not open image I_vent_render

Error in slicer input, exiting...


Cannot open grIa.png for reading

Segmentation fault (core dumped)

/bin/rm: cannot remove : No such file or directory


Finished. The SIENAX report can be viewed by pointing your web browser at:

file:/home/wyey0755/Downloads/fslvbmtest/image/T1/20140420_1410078HRfMRI9s008a1001_sienax/report.html

Estimated normalised brain volume (NBV) =  2.50



Thank you.