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Hi,

I am using 'applytopup' to unwarp my functional EPI images, but the process
gets killed due to lack of memory. These are huge files (>60minutes of run
time), so I have the same problem with other commands as well. I'm assuming
the problem is that the whole 4D file is operated upon in memory storage,
so I was thinking of just using fslsplit and running applytopup on each
each volume. Is there any particular reason that commands operating only in
spatial dimensions (i.e. smoothing, uwarping, etc.) aren't carried out in
this way? Also, if there already exists a better solution it would be great
to know.

Thanks!!

David