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Hello, Thanks for the project and for the spectrum. I did hit one error when trying to open a spectrum via the project, because the code is not clever enough to ask where the spectrum is when it is in a different location than previously (in our case because it's a different computer). But that gave a different error to what you hit, so it explicitly said what the problem was (i.e. the original spectrum path was not valid). When I fixed the path (by editing the relevant XML file, so not to be generally recommended) it then opened up the three spectra ok (one at a time). Since it looks like SpecView will only open up one spectrum from a CCPN project at a time in any case, I'd recommend just opening up a spectrum via the usual mechanism (in the Bruker case, dragging the procs file). (So it looks to me like the CCPN project reading option is a bit of a pointless addition the way it has been implemented.) Wayne On 21 Apr 2014, at 11:21, Blanca López-Méndez wrote: > > Thanks you very much. I've tried with the new code and I've still the same problem. I don't know if that BufferedIOBase exception could be relevant, but I've found there's a module called io under > ccpnmr3.0/python/ccpnmr/specView could be a conflict with the namespaces? If so, how could this be solved? > > > Again, thanks a lot. Best, > Blanca > > On Tue, 2014-04-15 at 15:18 +0100, Wayne Boucher wrote: >> OK, it turns out that it wasn't as bad as I thought. So it allows you to open only one spectrum at a time for a CCPN project, which is what it was trying to do here. But there was a bug in that code, so I have fixed that now. But it's odd it gave you that error message, rather than the one I triggered because of this bug, so possibly something else is wrong somewhere. Anyway, I have put together a SpecView1.0.4 now which fixes this bug (and a few others which had crept in): >> >> >> http://www.ccpn.ac.uk/downloads/leadingedge >> >> >> The installation script has changed, and there are notes about that on that webpage as well. >> >> >> Wayne >> >> On 13 Apr 2014, at 15:28, Wayne Boucher wrote: >> >>> Hello, >>> >>> >>> That BufferedIOBase exception looks like some internal Python error reporting bug. >>> >>> >>> The other error is more significant. It looks like it is trying to open the project as a spectrum, which is clearly wrong and needs fixing. >>> >>> >>> Wayne >>> >>> On 11 Apr 2014, at 21:13, Blanca López-Méndez <[log in to unmask]> wrote: >>> >>>> Hi, >>>> >>>> I save a couple of 1d spectra in a specView project. When I try to open the project I've the following error: >>>> >>>> Model read finished. Duration 0.951414108276 >>>> Model validity check skipped >>>> Traceback (most recent call last): >>>> File "/usr/local/soft.new/ccpnmr/ccpnmr3.0/python/ccpnmr/specView/gui/SpecViewMain.py", line 869, in readCcpn >>>> self.openSpectrum(dirName) >>>> File "/usr/local/soft.new/ccpnmr/ccpnmr3.0/python/ccpnmr/specView/gui/SpecViewMain.py", line 401, in openSpectrum >>>> openedSpectra = self.openSpectra([filePath,], replace) >>>> File "/usr/local/soft.new/ccpnmr/ccpnmr3.0/python/ccpnmr/specView/gui/SpecViewMain.py", line 598, in openSpectra >>>> spectrum.parent = self.parent >>>> AttributeError: 'NoneType' object has no attribute 'parent' >>>> Error in sys.excepthook: >>>> Traceback (most recent call last): >>>> File "/usr/lib/python2.7/dist-packages/apport_python_hook.py", line 66, in apport_excepthook >>>> from apport.fileutils import likely_packaged, get_recent_crashes >>>> File "/usr/lib/python2.7/dist-packages/apport/__init__.py", line 1, in <module> >>>> from apport.report import Report >>>> File "/usr/lib/python2.7/dist-packages/apport/report.py", line 18, in <module> >>>> import problem_report >>>> File "/usr/lib/python2.7/dist-packages/problem_report.py", line 14, in <module> >>>> import zlib, base64, time, sys, gzip, struct, os >>>> File "/usr/lib/python2.7/gzip.py", line 36, in <module> >>>> class GzipFile(io.BufferedIOBase): >>>> AttributeError: 'module' object has no attribute 'BufferedIOBase' >>>> >>>> Original exception was: >>>> Traceback (most recent call last): >>>> File "/usr/local/soft.new/ccpnmr/ccpnmr3.0/python/ccpnmr/specView/gui/SpecViewMain.py", line 869, in readCcpn >>>> self.openSpectrum(dirName) >>>> File "/usr/local/soft.new/ccpnmr/ccpnmr3.0/python/ccpnmr/specView/gui/SpecViewMain.py", line 401, in openSpectrum >>>> openedSpectra = self.openSpectra([filePath,], replace) >>>> File "/usr/local/soft.new/ccpnmr/ccpnmr3.0/python/ccpnmr/specView/gui/SpecViewMain.py", line 598, in openSpectra >>>> spectrum.parent = self.parent >>>> AttributeError: 'NoneType' object has no attribute 'parent' >>>> >>>> Nevertheless, I can open the single spectrum. How can I open a project with several spectra? >>>> >>>> Thanks, >>>> Blanca >>>> >>>> >>>> > -- > ******************************************************** > Blanca López Méndez Spectroscopy and NMR Unit > Structural and Computational Biology Program > Centro Nacional de Investigaciones Oncológicas > C/ Melchor Fernández Almagro, 3 Madrid E-28029. Spain > Tel.: +34-91-7328000(ext.3040/41). Fax.:+34-91-2246976 > ******************************************************** > > > > > **NOTA DE CONFIDENCIALIDAD** Este correo electrónico, y en su caso los ficheros adjuntos, pueden contener información protegida para el uso exclusivo de su destinatario. Se prohíbe la distribución, reproducción o cualquier otro tipo de transmisión por parte de otra persona que no sea el destinatario. 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