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Dear FSL experts, I have been using this fslstats command for getting the FA and MD values for the Probtrax analysis, fslstats dti_FA.nii.gz -k fdt_paths.nii.gz -M -S How do I select the upper and the lower thresholds from the fdt and get the right results? I'll appreciate your response on this. Thanks in advance, Supreet. On Thu, Mar 27, 2014 at 6:40 AM, Xiangzhen Kong <[log in to unmask]> wrote: > Hi Supreet, > With the dtifit from FDT, you can get the L1, L2, L3. > Then, L1 is the Axial Diffusivity (AD), and (L2+L3)/2 is the Radial > Diffusivity (RD). > You can use fslmaths to calculate the RD. > > Hope this helps. > Best! > > Xiangzhen > > ------------------------------ > 【小孔成像】http://www.conxz.net > > *From:* Supreet kaur <[log in to unmask]> > *Date:* 2014-03-25 23:32 > *To:* FSL <[log in to unmask]> > *Subject:* [FSL] Probtrax results > Dear FSL experts, > > I am currently using the Probtrax for probabilistic tractography. I need > to know how we could get > the Radial and axial diffusivity from the results (FDT final) folder. > > I'll really appreciate your response. > > Thanks in advance, > > Sincerely, > > Supreet kaur, > Biomedical research engineer, > Nationwide Childrens Hospital, > Columbus, OH > > -- Sincerely, Supreet kaur, Biomedical research engineer, Nationwide Childrens Hospital, Columbus, OH (614)355-3509