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If you know the value of the region in the atlas, you could use imcalc to create a ROI. The equation would be: ((i1>N-.5).*(i1<N+.5))>0 where N is the value of the region in the atlas file. Best Regards, Donald McLaren ================= D.G. McLaren, Ph.D. Research Fellow, Department of Neurology, Massachusetts General Hospital and Harvard Medical School Postdoctoral Research Fellow, GRECC, Bedford VA Website: http://www.martinos.org/~mclaren Office: (773) 406-2464 ===================== This e-mail contains CONFIDENTIAL INFORMATION which may contain PROTECTED HEALTHCARE INFORMATION and may also be LEGALLY PRIVILEGED and which is intended only for the use of the individual or entity named above. If the reader of the e-mail is not the intended recipient or the employee or agent responsible for delivering it to the intended recipient, you are hereby notified that you are in possession of confidential and privileged information. Any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited and may be unlawful. If you have received this e-mail unintentionally, please immediately notify the sender via telephone at (773) 406-2464 or email. On Fri, Jan 31, 2014 at 5:15 PM, Xu, Ben (NIH/NINDS) [E] < [log in to unmask]> wrote: > Hi, > > Is it possible to use the ICBM DTI-81 Atlas or the ICBM Probabilistic > Atlas (and other ICBM brain atlases) with WFU_PickAtlas in spm8? Or is > there a way that I can use the atlases to create a DTI track or a > white-matter region mask? > > Thanks much for your help in advance. > > Ben > > ------------------------------------------------ > > Benjamin Xu, Ph.D. > > 7D51 Bldg 10 Center Dr. > > Human Cortical Physiology Section/NINDS > > The National Institutes of Health > > Bethesda, MD 20892 > > Tel: 301-402-7968 > > Fax: 301-480-2286 > > Email: [log in to unmask] > >