Hi,

What do you mean by "it does not work"?

If you can give us more details about the exact command you are using and what the output is, including all error messages, then hopefully we can help you.

All the best,

Mark

On 11 Feb 2014, at 09:21, Rosalia Dacosta Aguayo <[log in to unmask]>

 wrote:

Hi Mark

It seems that it is not working. I am trying with fslstats:  fslstats -t -k mask.nii.gz.... I am unsure about the image I should enter for -t...I tried tfce_corrp...but it does not work. Could you help me with this?

Best regards,

Rosaila.

2014-02-11 0:42 GMT+01:00 Mark Jenkinson <[log in to unmask]>:

Hi,

You can use fslstats or fslmeants to extract values from the statistical image using a mask.

All the best,
        Mark

On 10 Feb 2014, at 17:04, Rosalia Dacosta Aguayo <[log in to unmask]> wrote:

> Dear FSL experts,
>
> I found significant anatomical results doing VBM analysis.
>
> I have done a mask (-thr 0.95 and binarized). Now, I am interested in extracting statistical values for every subject from this mask (= I am not interested in running correlations for the whole brain again).
>
> Any of you could help me with this?
>
> Kind regards,
> Rosalia.