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Hi, I did a mask from my tfce_corrp_tstat2.nii.gz....with fslmaths thr 0.5 and bin.. Then I try with fslstats -t -k mask.nii.gz and it does not appear anything...I think I have to specify the input for -t but with VBM I have no idea...sorry for this basic question. Best regards, Rosalia. 2014-02-11 10:25 GMT+01:00 Mark Jenkinson <[log in to unmask]>: > Hi, > > What do you mean by "it does not work"? > If you can give us more details about the exact command you are using and > what the output is, including all error messages, then hopefully we can > help you. > > All the best, > Mark > > > On 11 Feb 2014, at 09:21, Rosalia Dacosta Aguayo <[log in to unmask]> > wrote: > > Hi Mark > > It seems that it is not working. I am trying with fslstats: fslstats -t > -k mask.nii.gz.... I am unsure about the image I should enter for -t...I > tried tfce_corrp...but it does not work. Could you help me with this? > > Best regards, > Rosaila. > > > 2014-02-11 0:42 GMT+01:00 Mark Jenkinson <[log in to unmask]>: > >> Hi, >> >> You can use fslstats or fslmeants to extract values from the statistical >> image using a mask. >> >> All the best, >> Mark >> >> >> On 10 Feb 2014, at 17:04, Rosalia Dacosta Aguayo <[log in to unmask]> >> wrote: >> >> > Dear FSL experts, >> > >> > I found significant anatomical results doing VBM analysis. >> > >> > I have done a mask (-thr 0.95 and binarized). Now, I am interested in >> extracting statistical values for every subject from this mask (= I am not >> interested in running correlations for the whole brain again). >> > >> > Any of you could help me with this? >> > >> > Kind regards, >> > Rosalia. >> > > >