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Hi Tony, Thank you so much! I can see it now. Ran On Mon, Feb 10, 2014 at 8:05 AM, Tony Jiang <[log in to unmask]>wrote: > Hi, Ran > > I have sent a copy of the file I have to your email address. > > Tony > ________________________________________ > From: FSL - FMRIB's Software Library [[log in to unmask]] on behalf of > Ran Xu [[log in to unmask]] > Sent: Sunday, February 09, 2014 6:42 PM > To: [log in to unmask] > Subject: Re: [FSL] Atlases problem > > Hi Kristie, > > Thank you very much! I tried your command, and there is an error saying > "Missing header/image file". I don't have this data > "JHU-ICBM-labels-2mm.nii.gz" under $FSLDIR/data/atlases/JHU/, instead I > have "JHU-ICBM-WhiteMatter-labels-2mm.nii.gz" and this one can't be loaded > in fslview. Under this directory I can open the rest files. > You opened "JHU-ICBM-labels-2mm.nii.gz", is this in the new released atlas? > > Thanks again, > > Ran > > > On Sun, Feb 9, 2014 at 2:28 PM, Kirstie Whitaker <[log in to unmask]<mailto: > [log in to unmask]>> wrote: > I just tried running this command: > > fslview $FSLDIR/data/atlases/JHU/JHU-ICBM-labels-2mm.nii.gz > > and the file opened in fslview. Can you try the same command and let me > know what error message is printed to the terminal or to the screen? > > Kx > > On 9 February 2014 20:22, Ran Xu <[log in to unmask]<mailto: > [log in to unmask]>> wrote: > Hi Kristie, > Thanks for your reply. I am sorry I didn't express myself clearly. The > problem is I can't open "JHU-ICBM-WhiteMatter-labels-2mm.nii.gz" using > fslview. So I try to unzip it and use other software to open it, but I > failed . > I also searched the FSL forum and others seemed to meet this problem > before. > So I am wondering how to get the "JHU-ICBM-WhiteMatter-labels-2mm.nii.gz" > that I can use? > > Thanks a lot, > > Ran > > > > On Sun, Feb 9, 2014 at 1:01 PM, Kirstie Whitaker <[log in to unmask]<mailto: > [log in to unmask]>> wrote: > Can you send the exact command that you're using? It may be that you > aren't able to unzip to that location. Have you tried copying the file to > one of your own directories and then unzipping it? > > Another point is to consider why you need to unzip the file? Most FSL > tools will allow you to work with it as a nii.gz file. > > Kx > > > On 9 February 2014 18:50, Ran Xu <[log in to unmask]<mailto: > [log in to unmask]>> wrote: > Dear FSL experts, > > > I can't unzip the JHU-ICBM-WhiteMatter-labels-2mm.nii.gz in FSL because > it's broken, where can I download this data with nii format? My FSL version > is 5.0 and this file still can't work. I also contacted the MRI_Studio and > nobody responded. > > Any advice will be appreciated. > > Ran > > > > > > > -- > Kirstie Whitaker, PhD > Research Associate > > Department of Psychiatry > University of Cambridge > > Mailing Address > Douglas House > 18b Trumpington Road > Cambridge, CB2 8AH > > Phone: +44 7583 535 307<tel:%2B44%207583%20535%20307> > Website: www.kirstiewhitaker.com<http://www.kirstiewhitaker.com> > > > > > -- > Kirstie Whitaker, PhD > Research Associate > > Department of Psychiatry > University of Cambridge > > Mailing Address > Douglas House > 18b Trumpington Road > Cambridge, CB2 8AH > > Phone: +44 7583 535 307<tel:%2B44%207583%20535%20307> > Website: www.kirstiewhitaker.com<http://www.kirstiewhitaker.com> > > > Kessler Foundation is proud to be recognized as one of the Best Places to > Work in New Jersey. > > > > The information in this transmission is intended for official use of the > Kessler Foundation. It is intended for the exclusive use of the persons or > entities to which it is addressed. If you are not an intended recipient or > the employee or agent responsible for delivering this transmission to an > intended recipient, be aware that any disclosure, dissemination, > distribution or copying of this communication, or the use of its contents, > is strictly prohibited. If you received this transmission in error, please > notify the sender by return e-mail and delete the material from any > computer. >