Hi everyone,
we have encountered what may be a bug in Feat v6.00.
We have observed this on OSX (10.6.8), CentOS6 and Ubuntu 12.04.4 (LTS).
When running Feat from the GUI we get fatal errors that go back to:
Initialisation
/usr/local/fsl/bin/fslmaths /home/bartschandreas/li_frontal_hofsaess/032_NCbenennenneu_mb3_69degr_esp0_70msiPAT2_PA_200 prefiltered_func_data -odt float
Total original volumes = 200
/usr/local/fsl/bin/fslroi prefiltered_func_data example_func 100 1
can't read "highres_files(1)": no such variable
while executing
"if { [ catch {
When we look at the design.fsf the following lines get deleted:
# B0 unwarp input image for analysis 1
set unwarp_files(1) "/path/to/fmap_rads"
# B0 unwarp mag input image for analysis 1
set unwarp_files_mag(1) "/path/to/magn_brain"
# Subject's structural image for analysis 1
set highres_files(1) "/path/to/HiRes_T1"
This is even though we specified the files correctly in the gui, with no bad characters in the pathnames and with proper images files.
Once we re-insert the lines into the *.fsf file and run feat from command line everything finishes fine.
Maybe you are able to confirm the issue and track it down.
Cheers,
Andreas
