Mask saved from FSLview:Image loaded from other program:I open fslview through the terminal and load a niftii file created by other program. Then I draw a mask on it. After saving the mask I load it again. Something weird happens to FSLview because the new file appears on the spot of the mask while the mask itself is shifts on the contralateral side. At this point I don't know what to trust, the mask that I loaded, or the mask that I was drawing which now is contralateral. Is there a way to fix this (I noticed other posts on this bug, not a solution though).Hi all,I noticed a previously reported bug is occurring in FSLview. The saved masks seem to be flipped.
DorianTJUHere are the details of the images:
filename fefa.nii
sizeof_hdr 348
data_type FLOAT64
dim0 4
dim1 128
dim2 128
dim3 66
dim4 3
dim5 1
dim6 1
dim7 1
vox_units Unknown
time_units Unknown
datatype 64
nbyper 8
bitpix 64
pixdim0 0.000000
pixdim1 2.000000
pixdim2 2.000000
pixdim3 2.000000
pixdim4 1.000000
pixdim5 1.000000
pixdim6 1.000000
pixdim7 1.000000
vox_offset 352
cal_max 0.0000
cal_min 0.0000
scl_slope 0.000000
scl_inter 0.000000
phase_dim 0
freq_dim 0
slice_dim 0
slice_name Unknown
slice_code 0
slice_start 0
slice_end 0
slice_duration 0.000000
time_offset 0.000000
intent Unknown
intent_code 0
intent_name
intent_p1 0.000000
intent_p2 0.000000
intent_p3 0.000000
qform_name Unknown
qform_code 0
qto_xyz:1 2.000000 0.000000 0.000000 0.000000
qto_xyz:2 0.000000 2.000000 0.000000 0.000000
qto_xyz:3 0.000000 0.000000 2.000000 0.000000
qto_xyz:4 0.000000 0.000000 0.000000 1.000000
qform_xorient Left-to-Right
qform_yorient Posterior-to-Anterior
qform_zorient Inferior-to-Superior
sform_name Scanner Anat
sform_code 1
sto_xyz:1 2.000000 0.000000 0.000000 -126.000000
sto_xyz:2 0.000000 2.000000 0.000000 -126.000000
sto_xyz:3 0.000000 0.000000 2.000000 -64.000000
sto_xyz:4 0.000000 0.000000 0.000000 1.000000
sform_xorient Left-to-Right
sform_yorient Posterior-to-Anterior
sform_zorient Inferior-to-Superior
file_type NIFTI-1+
file_code 1
descrip Created with ExploreDTI
aux_file none
filename test3saved.nii.gz
sizeof_hdr 348
data_type INT16
dim0 3
dim1 128
dim2 128
dim3 66
dim4 1
dim5 1
dim6 1
dim7 1
vox_units mm
time_units s
datatype 4
nbyper 2
bitpix 16
pixdim0 0.000000
pixdim1 2.000000
pixdim2 2.000000
pixdim3 2.000000
pixdim4 0.000000
pixdim5 0.000000
pixdim6 0.000000
pixdim7 0.000000
vox_offset 352
cal_max 4.0000
cal_min 0.0000
scl_slope 0.000000
scl_inter 0.000000
phase_dim 0
freq_dim 0
slice_dim 0
slice_name Unknown
slice_code 0
slice_start 0
slice_end 0
slice_duration 0.000000
time_offset 0.000000
intent Label index
intent_code 1002
intent_name
intent_p1 0.000000
intent_p2 0.000000
intent_p3 0.000000
qform_name Scanner Anat
qform_code 1
qto_xyz:1 2.000000 0.000000 0.000000 -126.000000
qto_xyz:2 0.000000 2.000000 0.000000 -126.000000
qto_xyz:3 0.000000 0.000000 2.000000 -64.000000
qto_xyz:4 0.000000 0.000000 0.000000 1.000000
qform_xorient Left-to-Right
qform_yorient Posterior-to-Anterior
qform_zorient Inferior-to-Superior
sform_name Scanner Anat
sform_code 1
sto_xyz:1 2.000000 0.000000 0.000000 -126.000000
sto_xyz:2 0.000000 2.000000 0.000000 -126.000000
sto_xyz:3 0.000000 0.000000 2.000000 -64.000000
sto_xyz:4 0.000000 0.000000 0.000000 1.000000
sform_xorient Left-to-Right
sform_yorient Posterior-to-Anterior
sform_zorient Inferior-to-Superior
file_type NIFTI-1+
file_code 1
descrip FSL4.1
aux_file Red-Yellowr