 |
 |
Dear Santa Claus,
this christmas my wish is a running Melodic analysis of my resting state data.
Thank you! ...
Sorry, but it seems only wishes will help me :)
These are the facts:
Feat main script stops after these 2 lines
/bin/cp /tmp/feat_RxkDYL.fsf design.fsf
mkdir .files;cp /usr/share/fsl/5.0/doc/fsl.css .files;ln
-s /usr/share/fsl/5.0/doc/images .files/images
Another log shows, that mainfeatreg fails (see below). I get the same error, if
I start mainfeatreg on the command line.
I have enough disk space, swap (22GB) and ram (4GB). I also tried the analysis
with a smaller nifti (only the first 100 dicoms) -> same errors.
Slicer seems to work correct, since a lot of files are produced (see output of
tree below) and I can run the commands in the command line without a problem.
But the error messages relate on that...
I would be glad about every hint or idea to try out.
I don't know if its important: I'm working on multiband images (factor 6 in
this case). Melodic did work fine before on other data. It's also the first case
in which I use the BBR, no resampling and Nonlinear Registration/fnirt, and 2
resting state sessions of the same person (so same structural/T1 image; I did
choose multi-session temporal concatenation). Brain-extracted and
non-brain-extracted do exist with the right name. At the moment I'm only
working with the GUI.
Thanks from Dresden at night with no snow,
Matthias
=============================================
$ cat feat1_reg
/usr/share/fsl/5.0/bin/mainfeatreg -F 6.00
-d /media/data/Prae-100_Small-ICA.ica
-l /media/data/Prae-100_Small-ICA.ica/logs/feat5_reg
-R /media/data/Prae-100_Small-ICA.ica/report_unwarp.html
-r /media/data/Prae-100_Small-ICA.ica/report_reg.html
-i /media/data/Prae-100_Small-ICA.ica/example_func.nii.gz
-n 10 -h /media/data/T1/coBet0.4_brain -w BBR -x 90
-s /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain -y 12 -z 90
[... explanations ... ]
Images aren't the same size!
Cannot open sla.png for reading
Segmentation fault
Images aren't the same size!
Cannot open sla.png for reading
Segmentation fault
Cannot open example_func2highres1.png for reading
Segmentation fault
/bin/rm: Entfernen von „example_func2highres1.png“ nicht möglich: Datei oder
Verzeichnis nicht gefunden
FATAL ERROR ENCOUNTERED
=============================================
$ tree
.
├── Prae-100.nii
└── Prae-100_Small-ICA.ica
├── design.fsf
├── example_func.nii.gz
├── logs
│ ├── feat0
│ ├── feat1
│ ├── feat1a_init
│ ├── feat1a_init.e8509
│ ├── feat1a_init.o8509
│ ├── feat1_reg
│ ├── feat3_reg.e8594
│ ├── feat3_reg.o8594
│ ├── feat5_reg
│ └── feat9
├── prefiltered_func_data.nii.gz
├── reg
│ ├── example_func2highres_fast_wmedge.nii.gz
│ ├── example_func2highres_init.mat
│ ├── example_func2highres.mat
│ ├── example_func2highres.nii.gz
│ ├── example_func2standard1.png
│ ├── example_func2standard.mat
│ ├── example_func2standard.nii.gz
│ ├── example_func2standard.png
│ ├── example_func2standard_warp.nii.gz
│ ├── example_func.nii.gz
│ ├── highres2example_func.mat
│ ├── highres2highres_jac.nii.gz
│ ├── highres2standard_linear.nii.gz
│ ├── highres2standard.mat
│ ├── highres2standard.nii.gz
│ ├── highres2standard.png
│ ├── highres2standard_warp.nii.gz
│ ├── highres_head.nii.gz
│ ├── highres_head_to_standard_head.log
│ ├── highres.nii.gz
│ ├── standard2example_func.mat
│ ├── standard2highres.mat
│ ├── standard_head.nii.gz
│ ├── standard_mask.nii.gz
│ └── standard.nii.gz
├── report.html
├── report_log.html
├── report_prestats.html
├── report_reg.html
└── report_unwarp.html
<design.fsf><report_log.html>