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You can model scanner effects as a covariate of no interest.  In SPM, it
just means another column of ones and zeros in the design matrix for the
case on 2 scanners.  For more than scanners, you'd need  additional columns.

Best regards,
-John



On 4 November 2013 08:11, Ben Becker <[log in to unmask]> wrote:

> Dear SPMers,
>
>  I used VBM8 to compare grey matter volumens in a priori specified ROIs in
> a group of patients vs controls. Next I analyzed data from an  independent
> sample (again: patients & controls, but from a different scanner) to
> replicate the initial findings.
> For further analyses I extracted ind. grey matter volumes from the ROIs
> were I find group differences using marsbar. To increase power I would like
> to pool the extracted data from both samples. However, both samples were
> acquired on different Scanners (Philips 1.5 vs Siemens 3T Trio) using
> different sequences. Are the extracted values study- & scanner-specific or
> do they represent absolute scanner-unspecific indices of grey matter
> volumes?
>
>  Thanks in advance & best regards
>
>  Ben
>