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https://mathgen.stats.ox.ac.uk/genetics_software/snptest/snptest.html Cheers, Latchezar From: Oxford Statistical Genetics Software [mailto:[log in to unmask]] On Behalf Of Jessica Cooke Bailey Sent: Tuesday, November 19, 2013 1:41 PM To: [log in to unmask] Subject: [OXSTATGEN] IMPUTE2 - post imputation analysis pipeline? Hi all, Is there a post-imputation analysis pipeline that you recommend? I have tried using FCGene to convert .impute2 files to PLINK dosage format but it takes quite a long time to do this as well as to analyze the data with PLINK. Any other tips would be greatly appreciated. Thank you! Jessica -- Jessica N. Cooke Bailey, PhD Postdoctoral Scholar Department of Epidemiology and Biostatistics Case Western Reserve University School of Medicine Cleveland, OH 44106 To unsubscribe from the list visit this webpage https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=OXSTATGEN&A=1 To unsubscribe from the list visit this webpage https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=OXSTATGEN&A=1