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Hi,

Although FIRST was successful in outputting the *_all_fast_origsegs.nii.gz
and *_all_fast_firsteg.nii.gz volumes, a few subjects did not have these
volumes.

For these subjects, the rest of the output was segmented successfully (i.e.
bvars and vtk and standardized volumes). Additionally, the registrations
were successful.

The errors received do not seem to tell me much about the nature of the
error (only that it does not exist)…

/usr/local/fsl/bin/run_first: line 164: 71885 Segmentation fault: 11
 ${FSLDIR}/bin/first -i $image -l $trmat -m $model -k $outname -n $modes
$verbose $comExtras
Image Exception : #22 :: ERROR: Could not open image s41-BrStem_corr
terminate called throwing an exception/bin/sh: line 1: 71934 Abort trap: 6
          /usr/local/fsl/bin/fslmerge -t s41_all_fast_firstseg
s41-L_Accu_corr s41-L_Amyg_corr s41-L_Caud_corr s41-L_Hipp_corr
s41-L_Pall_corr s41-L_Puta_corr s41-L_Thal_corr s41-R_Accu_corr
s41-R_Amyg_corr s41-R_Caud_corr s41-R_Hipp_corr s41-R_Pall_corr
s41-R_Puta_corr s41-R_Thal_corr s41-BrStem_corr
Image Exception : #22 :: ERROR: Could not open image s41-BrStem_first
terminate called throwing an exception/bin/sh: line 1: 71935 Abort trap: 6
          /usr/local/fsl/bin/fslmerge -t s41_all_fast_origsegs
s41-L_Accu_first s41-L_Amyg_first s41-L_Caud_first s41-L_Hipp_first
s41-L_Pall_first s41-L_Puta_first s41-L_Thal_first s41-R_Accu_first
s41-R_Amyg_first s41-R_Caud_first s41-R_Hipp_first s41-R_Pall_first
s41-R_Puta_first s41-R_Thal_first s41-BrStem_first
Image Exception : #22 :: ERROR: Could not open image s41_all_fast_origsegs
Aborted

Thanks,
Mike Kranz

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Michael Kranz
Graduate Research Assistant |Beckman Institute University of Illinois
314-323-1329