Dear FSL experts,
I am trying to run FSLNETS and I have some error (please see below) which I
don't know how to solve it. When I run it (11 data set(6GroupA,5groupB), 25
components), it creates the first 6 figures and the problem comes from
temporary file name which generates with matlab code in /tmp directory.
somehow this file doesn't exist, then I will get fid=-1!
"
ans =
max abs value below diagonal is 4.384943
ans =
max abs value above diagonal is 3.060720
Warning: ward's linkage specified with non-Euclidean dissimilarity matrix.
> In linkage at 171
In nets_hierarchy at 26
In my_nets at 59
/bin/bash: slices_summary: command not found
Error using fread
Invalid file identifier. Use fopen to generate a valid file identifier.
Error in read_avw_hdr (line 17)
testval = fread(fid,1,'int32');
Error in save_avw (line 28)
[dims,scales,bpp,endian,datatype]=read_avw_hdr(tmpname);
Error in nets_glm (line 16)
save_avw(reshape(netmat',XXX,1,1,TTT),fname,'f',[1 1 1 1]);
Error in my_nets (line 64)
[p_uncorrected,p_corrected]=nets_glm(netmat1,'Design.mat','Design.con',1);
% returns matrices of 1-p
"
/bin/bash: slices_summary: command not found ==> I have already add the
fsl5.0.
Please let me know if you think of any solution.
Best wishes,
Maryam
