Dear kavita, You may try Tobias tool rbet http://www.kcl.ac.uk/iop/depts/neuroimaging/research/imaginganalysis/Software/ rBET.aspx Cheers On Fri, Nov 15, 2013 at 1:29 AM, kavita singh <[log in to unmask]>wrote: > Hello List, > > I am trying to process diffusion data from bruker (2dseq) in FSL. the BET > program is running but the pixels are deformed and axial brain is inverted. > Any help will be highly appreciated. If BET can not be performed for small > animal using FSL, plz provide any alternative. > > Regards!!! > > -- > Kavita Singh > Ph. D Scholar > NMR Research Centre > INMAS-DRDO > Delhi-54. > skype:livekavita123 > > http://www.linkedin.com/profile/view?id=116620043&trk=nav_responsive_tab_profile > > > > -- Sunil Koundal Senior Research Fellow NMR Research Centre INMAS, DRDO DELHI-54 Mobile number -+919910969525