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Dear kavita,
                  You may try Tobias tool rbet
http://www.kcl.ac.uk/iop/depts/neuroimaging/research/imaginganalysis/Software/
rBET.aspx

Cheers


On Fri, Nov 15, 2013 at 1:29 AM, kavita singh <[log in to unmask]>wrote:

> Hello List,
>
> I am trying to process diffusion data from bruker (2dseq) in FSL. the BET
> program is running but the pixels are deformed and axial brain is inverted.
> Any help will be highly appreciated. If BET can not be performed for small
> animal using FSL, plz provide any alternative.
>
> Regards!!!
>
> --
> Kavita Singh
> Ph. D Scholar
> NMR Research Centre
> INMAS-DRDO
> Delhi-54.
> skype:livekavita123
>
> http://www.linkedin.com/profile/view?id=116620043&trk=nav_responsive_tab_profile
>
>
>
>


-- 
Sunil Koundal
Senior Research Fellow
NMR Research Centre
INMAS, DRDO
DELHI-54
Mobile number -+919910969525