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In my opinion exclude significant voxels just because they dont fit glass brain is a wrong approach.

I would better map those voxels on the anatomical sections (overlay>sections>your normalized anatomy image). I think that the resulting image will be more clear than the glass brain, since the anatomical landmarks will be visible and there will be no confusion concerning "voxels outside the brain".

Sincerely yours,
Vladimir

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From: Aser A <[log in to unmask]>
To: [log in to unmask]
Sent: Wednesday, October 16, 2013 9:28 PM
Subject: Re: [SPM] voxel outside brain glass

Hi Watson and all,

Thanks for your response. Is there any way of making these voxels to appear inside the glass brain or remove them for the purpose of showing them ?

Thanks

Aser

On Wed, Oct 16, 2013 at 8:21 PM, Watson, Christopher <[log in to unmask]> wrote:

If it looks fine when you overlay it on a T1, then it is not outside the brain.
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From: SPM (Statistical Parametric Mapping) [[log in to unmask]] on behalf of Aser A [[log in to unmask]]
Sent: Wednesday, October 16, 2013 3:17 PM
To: [log in to unmask]
Subject: [SPM] voxel outside brain glass

Hi all,

I have a cluster that seems to be outside the brain glass ( appeared in the coronal section attached, top right) I am not sure if it is really outside or not since when I overlap it with a T1 volume, it is not.

Any comments will be appreciated and is this normal/accepted?

Thanks

Aser

[Inline image 1]