I have had no problems
with SGE on a multi-core computer. i.e. not on a cluster.
However I have not used FSL-VBM, but if I had to guess, it should
work just the same.
On 10/11/2013 09:49 AM, SG KIM wrote:
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Dear FSLers,
It seems to that the scripts for FSL-VBM have been improved
to cover more default routines and nicely work with fsl_sub. The
only problem is that we don't have SGE cluster machines, as far
as I know, in our institute :(
So I wish to run the scripts with multi-thread computing, but
it looks like the job files that the FSLVBM scripts generate
need to be processed (creating a job file for each subject and
parameter set) for multi-thread scripts such as ANTSpexec.sh.
But evaluating the loops in job files without running
commands inside seems a bit difficult to me... so I guess I
should modify the VBM scripts for multi-threads
computing. Anyone already has done it and won't mind sharing
with others? :)
Seriously, I think the multi-thread option would be more
generally used by many users, given that an usual desktop
nowadays has 6-8 cores... I wonder if the official version
doesn't have such functionality, or it's just me who are not
aware of it.
Best,