Print

Print


I have had no problems with SGE on a multi-core computer. i.e. not on a cluster.
However I have not used FSL-VBM, but if I had to guess, it should work just the same.


On 10/11/2013 09:49 AM, SG KIM wrote:
[log in to unmask]" type="cite">
Dear FSLers,

It seems to that the scripts for FSL-VBM have been improved to cover more default routines and nicely work with fsl_sub. The only problem is that we don't have SGE cluster machines, as far as I know, in our institute :(

So I wish to run the scripts with multi-thread computing, but it looks like the job files that the FSLVBM scripts generate need to be processed (creating a job file for each subject and parameter set) for multi-thread scripts such as ANTSpexec.sh.

But evaluating the loops in job files without running commands inside seems a bit difficult to me... so I guess I should modify the VBM scripts for multi-threads computing. Anyone already has done it and won't mind sharing with others? :)

Seriously, I think the multi-thread option would be more generally used by many users, given that an usual desktop nowadays has 6-8 cores... I wonder if the official version doesn't have such functionality, or it's just me who are not aware of it.


Best,
---
Seung-Goo KIM