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Installation instructions for FIVE is on the webpage that describes the program. There is no manual, but the basic functions are rather intuitive.

peak_nii is available from www.martinos.org/~mclaren/ftp/Utilities_DGM

There are some example files of the parameter settings as well. If you need help with programming, I'd ask someone in your lab or department.

I've attached the beta version of the manual.

Best Regards, Donald McLaren
=================
D.G. McLaren, Ph.D.
Research Fellow, Department of Neurology, Massachusetts General Hospital and
Harvard Medical School
Postdoctoral Research Fellow, GRECC, Bedford VA
Website: http://www.martinos.org/~mclaren
Office: (773) 406-2464
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On Wed, Sep 4, 2013 at 3:47 AM, fMRI <[log in to unmask]> wrote:
Hi Donald,

I am not a programer and I use matlab for basic things. So firstly I could not know how and from where to install these two software. And secondly is there any manual explaining how to use them?  

Regards,

AS

On 3 Sep 2013, at 03:09 PM, "MCLAREN, Donald" <[log in to unmask]> wrote:

You'd need to make an image with each voxel having a different value. Then you could use FIVE to display the image and overlay.

My peak_nii program creates an image with cross-hairs at the peak in each cluster and makes the intensity the cluster number. Opening this in FIVE would give you voxels with different colors.

I believe you might be able to generate the glass brain in FIVE as well - but all points would be black.


Best Regards, Donald McLaren
=================
D.G. McLaren, Ph.D.
Research Fellow, Department of Neurology, Massachusetts General Hospital and
Harvard Medical School
Postdoctoral Research Fellow, GRECC, Bedford VA
Website: http://www.martinos.org/~mclaren
Office: (773) 406-2464
=====================
This e-mail contains CONFIDENTIAL INFORMATION which may contain PROTECTED
HEALTHCARE INFORMATION and may also be LEGALLY PRIVILEGED and which is
intended only for the use of the individual or entity named above. If the
reader of the e-mail is not the intended recipient or the employee or agent
responsible for delivering it to the intended recipient, you are hereby
notified that you are in possession of confidential and privileged
information. Any unauthorized use, disclosure, copying or the taking of any
action in reliance on the contents of this information is strictly
prohibited and may be unlawful. If you have received this e-mail
unintentionally, please immediately notify the sender via telephone at (773)
406-2464 or email.


On Mon, Sep 2, 2013 at 8:15 AM, fMRI <[log in to unmask]> wrote:
Hi all,

Is there anyway of displaying different voxels that I defined their coordinates in a brain glass or a MNI map  with different colors ?

Regards,

AS