Hi

On 18 Sep 2013, at 03:10, afefferbaum <[log in to unmask]> wrote:

If I am using my own template that does not match and is not registered to the MNI152 do I need to create a template for the cingullum from my own data?

If this is human data and hence you have the similar issue wrt the topography of the lower cingulum (see original TBSS paper for details), then yes it's probably worth generating your own mask for this.

Is the LowerCingulum_1mm template used only for the lower cingulum?

Look at it  (the standard space cingulum mask)     :-)

Does it have any influence on other tracts?

It shouldn't do, as the skeleton-projection step is a very localised operation.

Cheers.

Thank you.

_____________________________

Adolf Pfefferbaum, MD
Neuroscience Program
SRI International
650-859-2927 phone
650-859-2743 FAX


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