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Thanks Dave.

Date: Mon, 30 Sep 2013 07:16:37 +0000
From: [log in to unmask]
Subject: Re: [FSL] Installation problems (Mac version)
To: [log in to unmask]

You only need to have answered y once to mess up your bash_profile. Did that ever happen? Look for a directory called y with fsl in it. Since you have already reinstalled into /usr/local then Matt's suggestion is fine but somewhere, I suspect, there's a y folder with another copy of fsl.

The installer is simple and such a bug unlikely, and inadvertently installing into y a known issue, but if you can show otherwise then we can investigate further.

Dave

Sent from Samsung Mobile



brain human <[log in to unmask]> wrote:


I tried to install it twice and each time I pressed Return only. Maybe there is a bug in the installer that installs the program in y install of /usr/local?

Anyway, I have modified the profile as Matt suggested. I can run the program now.


> Date: Sun, 29 Sep 2013 10:21:28 +0000
> From: [log in to unmask]
> Subject: Re: [FSL] Installation problems (Mac version)
> To: [log in to unmask]
>
> That you have y/fsl means you told the installer to install in "y" when asked. You probably thought you were answering yes to the suggested path. Several have made this mistake recently. I'd recommend removing the y directory, wherever that may be, then delete the fsl lines in .bash_profile and reinstall. Type return to accept the suggested path.
>
> --
> Dave Flitney
> IT Manager, FMRIB Centre
>
> > On 29 Sep 2013, at 09:45, "Matthew Webster" <[log in to unmask]> wrote:
> >
> > Hello,
> > You need to modify the line reading:
> >
> > FSLDIR=y/fsl
> >
> > to
> >
> > FSLDIR=/usr/local/fsl
> >
> > and then resource the .bash_profile.
> >
> > To answer your other question, the fsl course data is not included with
> > the main FSL distribution ( due to its size ) and can be downloaded from:
> >
> > http://fsl.fmrib.ox.ac.uk/fslcourse/
> >
> > Kind Regards
> >
> > Matthew
> >
> >
> >
> >> When I typed "less ~/.bash_profile", I found the following:
> >>
> >> # FSL Setup
> >> FSLDIR=y/fsl
> >> PATH=${FSLDIR}/bin:${PATH}
> >> export FSLDIR PATH
> >> . ${FSLDIR}/etc/fslconf/fsl.sh
> >>
> >> No idea the meaning... Perhaps the environmental variable was not set
> >> properly by the installation program?
> >>
> >>