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Forgot to forward this reply from Tim: "Looks like a bug in the DP calculation. My guess would be that there is an issue with the calculation of the random coil expectation, due to the presence of rings (I suspect in calculation of intervening bonds). Likely fixable, but needs for me to find time to look at it." Wayne On 6 Sep 2013, at 19:12, David Langelaan <[log in to unmask]> wrote: > Hello, > > I have been trying to do RPF analysis for a protein-peptide complex. Anyways, for the aromatic spectra, the scores seem a bit weird, for example a high recall/precision but DP score of 0, or high DP score despite really low recall and precision. > > I am just wondering if this is normal at all? The RPF table is attached. > > Thanks, > > David > <RPF.txt>