Dear Gemma,
It looks like you didn't install the full SPM version but just the updates.
Try running spm_update in the SPM version that worked before or just
download a full version of SPM via registration form.
Best,
Vladimir
On Thu, Aug 29, 2013 at 2:34 PM, Gemma Barnacle <
[log in to unmask]> wrote:
> Hi Vladimir,
>
> I have done what you suggested, but this has not helped. When I tried to
> used the Batch function there was no 'SPM' menu to select a module to run.
> I tried instead using the GUI and '3D Source Reconstr.' but when I tried to
> load a file (from before the averaging step for one subject) I got this
> error:
>
> *Inputs to cfg_getfile('CPath',...) must be cellstr.
> Error using char
> Cell elements must be character arrays.
>
> Error in spm_file (line 162)
> str = char(str);
>
> Error in spm_eeg_load (line 32)
> P = spm_file(spm_file(P, 'ext', '.mat'), 'cpath');
>
> Error in spm_eeg_inv_imag_api>Load_Callback (line 124)
> D = spm_eeg_load(S);
>
>
> Error in spm_eeg_inv_imag_api (line 53)
> feval(varargin{:}); % FEVAL switchyard
>
> Error while evaluating uicontrol Callback
>
> *I'm also copying below the text I got when I started SPM12b because
> there seemed to be a lot going on, and this was not the case with the
> previous version I was using.
>
> ___ ____ __ __
> / __)( _ \( \/ )
> \__ \ )___/ ) ( Statistical Parametric Mapping
> (___/(__) (_/\/\_) SPM12b - http://www.fil.ion.ucl.ac.uk/spm/
>
>
> SPM12b: v5616 14:28:00 - 29/08/2013
> ========================================================================
> Initialising SPM : ..Can not
> initialise generic: job is not a struct.
> Item 'Tissue probability map', field 'val': Number of matching files (0)
> less than required (1).
> Can not initialise generic: job is not a struct.
> Item 'Tissue probability map', field 'val': Number of matching files (0)
> less than required (1).
> Can not initialise generic: job is not a struct.
> Item 'Tissue probability map', field 'val': Number of matching files (0)
> less than required (1).
> Can not initialise generic: job is not a struct.
> Item 'Tissue probability map', field 'val': Number of matching files (0)
> less than required (1).
> Can not initialise generic: job is not a struct.
> Item 'Tissue probability map', field 'val': Number of matching files (0)
> less than required (1).
> Can not initialise generic: job is not a struct.
> Item 'Tissue probability map', field 'val': Number of matching files (0)
> less than required (1).
> Can not initialise generic: job is not a struct.
> Item 'Tissue probability map', field 'val': Number of matching files (0)
> less than required (1).
> Can not initialise generic: job is not a struct.
> Item 'Serial Longitudinal Registration', field 'prog': Value must be a
> function or function handle on MATLAB path.
> Can not initialise generic: job is not a struct.
> Item 'Tissue probability map', field 'val': Number of matching files (0)
> less than required (1).
> Can not initialise generic: job is not a struct.
> Item 'Tissue probability map', field 'val': Number of matching files (0)
> less than required (1).
> Can not initialise generic: job is not a struct.
> Item 'Tissue probability map', field 'val': Number of matching files (0)
> less than required (1).
> Can not initialise generic: job is not a struct.
> Item 'Tissue probability map', field 'val': Number of matching files (0)
> less than required (1).
> Can not initialise generic: job is not a struct.
> Item 'Tissue probability map', field 'val': Number of matching files (0)
> less than required (1).
> Can not initialise generic: job is not a struct.
> Item 'Tissue probability map', field 'val': Number of matching files (0)
> less than required (1).
> Can not initialise generic: job is not a struct.
> Failed to load C:\Users\G\Desktop\SPM\spm8\config\cfg_mlbatch_appcfg.m
> Error using subsasgn (line 88)
> Reference to unknown field 'rewrite_job'.
> To assign to a field in the job structure, use a reference like
> '(x).rewrite_job'.
> In file "subsasgn.m" (???), function "subsasgn" at line 88.
> In file "spm_cfg.m" (v5545), function "spm_cfg" at line 128.
> In file "cfg_mlbatch_appcfg.m" (v2086), function "cfg_mlbatch_appcfg" at
> line 10.
> In file "cfg_util.m" (v4252), function "local_initapps" at line 1297.
> In file "cfg_util.m" (v4252), function "cfg_util" at line 619.
> In file "spm_jobman.m" (v4242), function "spm_jobman" at line 160.
> In file "spm.m" (v5604), function "spm" at line 341.
>
> .....
>
> Is it possible to go back to the old version of SPM that I was using? That
> version seemed to get me a little further than this.
>
> Please let me know if you require me to send any files etc. to assist with
> figuring this out.
>
> Best Wishes,
>
> Gemma.
>
> Miss Gemma E. Barnacle
> PhD Student
> School of Psychology
> Room 119, Zochonis Building
> University of Manchester
> M13 9PL.
> http://www.psych-sci.manchester.ac.uk/students/GemmaEBarnacle
> ------------------------------
> *From:* Vladimir Litvak [[log in to unmask]]
> *Sent:* 28 August 2013 13:55
> *To:* Gemma Barnacle
> *Cc:* [log in to unmask]
>
> *Subject:* Re: [SPM] source localisation error
>
> That's quite strange.I would suggest that you download the latest
> SPM12b version from the website, reset your Matlab path to default and add
> just SPM top folder to it, then rerun SPM, delete the previous
> reconstructions in 3D tool and start from scratch. If you still have the
> problem then, I'll need to look at a data example.
>
> Vladimir
>
>
> On Wed, Aug 28, 2013 at 1:39 PM, Gemma Barnacle <
> [log in to unmask]> wrote:
>
>> Thanks Vladimir,
>>
>> I am actually not getting as far as the invert step, with the error
>> arising at the Forward Model step. I specify BEM but it will not process
>> the request. Here is what appears in the Command Window:
>>
>>
>> reordering the boundaries to: 1 2 3
>> Error using horzcat
>> Dimensions of matrices being concatenated are not consistent.
>>
>> Error in triangle4pt (line 58)
>> sph_pnt = pnt([tri(jj,:) lv],:);
>>
>> Error in ft_headmodel_bemcp (line 102)
>> vol = triangle4pt(vol);
>>
>> Error in ft_prepare_headmodel (line 206)
>> vol = ft_headmodel_bemcp(geometry,'conductivity',cfg.conductivity);
>>
>> Error in spm_eeg_inv_forward (line 83)
>> vol = ft_prepare_headmodel(cfg, vol);
>>
>> Error in spm_eeg_inv_forward_ui (line 42)
>> D = spm_eeg_inv_forward(D);
>>
>> Error in spm_eeg_inv_imag_api>Forward_Callback (line 87)
>> handles.D = spm_eeg_inv_forward_ui(handles.D);
>>
>> Error in spm_eeg_inv_imag_api (line 53)
>> feval(varargin{:}); % FEVAL switchyard
>>
>> Error while evaluating uicontrol Callback
>>
>> >>
>>
>> Hopefully this will give you some info as to what I'm doing wrong.
>> Thanks,
>>
>>
>> Gemma.
>>
>> Miss Gemma E. Barnacle
>> PhD Student
>> School of Psychology
>> Room 119, Zochonis Building
>> University of Manchester
>> M13 9PL.
>> http://www.psych-sci.manchester.ac.uk/students/GemmaEBarnacle
>> ------------------------------
>> *From:* SPM (Statistical Parametric Mapping) [[log in to unmask]] on
>> behalf of Vladimir Litvak [[log in to unmask]]
>> *Sent:* 28 August 2013 13:23
>> *To:* [log in to unmask]
>> *Subject:* Re: [SPM] source localisation error
>>
>> Dear Gemma,
>>
>> Could you use the GUI and send everything that is printed in the
>> command window from the point when you pressed the 'invert' button?
>>
>> Thanks,
>>
>> Vladimir
>>
>>
>> On Wed, Aug 28, 2013 at 1:11 PM, Gemma Barnacle <
>> [log in to unmask]> wrote:
>>
>>> Dear Experts,
>>>
>>> I have followed the instructions from the SPM training day earlier this
>>> year to complete source reconstruction on my EEG data. I have tried using
>>> the GUI and the batch function but both are not working for me. The common
>>> error I seem to get is:
>>>
>>> *Error using horzcat
>>> Dimensions of matrices being concatenated are not consistent.*
>>>
>>> Please could anyone tell me what this refers to? And how to correct
>>> this error?
>>>
>>> Many thanks in advance,
>>> Gemma.
>>>
>>> Miss Gemma E. Barnacle
>>> PhD Student
>>> School of Psychology
>>> Room 119, Zochonis Building
>>> University of Manchester
>>> M13 9PL.
>>> http://www.psych-sci.manchester.ac.uk/students/GemmaEBarnacle
>>>
>>
>>
>
