DEar Prof,

I have read up on BET from this link: http://fsl.fmrib.ox.ac.uk/fslcourse/lectures/practicals/intro/index.html#bet

It says to run BET on the FSL BET. How do I open the FSL GUI? Tqvm.

Best regards,

Isobel French

Academic Coordinator and Research Officer

Division of Neurosurgery

Department of Surgery

Faculty of Medicine

University of Malaya

016-7937605

03-79493138

On Thu, Aug 1, 2013 at 1:36 PM, Isobel French <[log in to unmask]> wrote:

DEar all,

I will most certainly go through the tutorial and get back to you all again later. Tqvm

Best regards,

Isobel French

Academic Coordinator and Research Officer

Division of Neurosurgery

Department of Surgery

Faculty of Medicine

University of Malaya

016-7937605

03-79493138

On Wed, Jul 31, 2013 at 1:40 PM, Watson, Christopher <[log in to unmask]> wrote:

You should go through the tutorials that are on the FSL wiki.
To convert DICOM to NIfTI, I use dcm2nii.

________________________________________
From: FSL - FMRIB's Software Library [[log in to unmask]] on behalf of Isobel French [[log in to unmask]]
Sent: Wednesday, July 31, 2013 1:38 AM
To: [log in to unmask]
Subject: Re: [FSL] Fwd: How To Write Command To Store Data

Hi,

Where can I find the fslmaths command? I want to run BET on MRI DICOM files. I will need to convert the DICOM files to NIFTII files in order to run it on FSL, is that correct? Now my first step is to create a file in order to store input and output data which has to be loaded and obtained from the BET kit as told by my supervisor. I would like to know how do I go about creating a file for both input and output data which will be run on the BET kit?

Tqvm.

Best regards,

Isobel French
Academic Coordinator and Research Officer
Division of Neurosurgery
Department of Surgery
Faculty of Medicine
University of Malaya
016-7937605
03-79493138

On Tue, Jul 23, 2013 at 3:05 PM, MD ADHIL <[log in to unmask]<mailto:[log in to unmask]>> wrote:

Try using fslmaths command which has many options which will edit your data according to your needs and you can save your result in a new file

On Jul 23, 2013 5:07 AM, "Isobel French" <[log in to unmask]<mailto:[log in to unmask]>> wrote:
>
>
> Best regards,
>
> Isobel French
> Academic Coordinator and Research Officer
> Division of Neurosurgery
> Department of Surgery
> Faculty of Medicine
> University of Malaya
> 016-7937605
> 03-79493138
>
>
> ---------- Forwarded message ----------

> From: neuro <[log in to unmask]<mailto:[log in to unmask]>>
> Date: Mon, Jul 22, 2013 at 12:20 PM
> Subject: How To Write Command To Store Data

> To: [log in to unmask]<mailto:[log in to unmask]>
>
>
> Dear Sir/ Madam,
>
> I am new to the FSL software and am interested in learning to use it. I would ilke to know how to write the command to be able to store a new data file. I would also like to know when the next training course be due. Tqvm.
>
> Best regards,
> Isobel French
>