Thanks Yuriy and Pavel,
at this resolution one would expect R/Rfree to be ~ 10-11%/12-13%
assuming you applied anisotropic B-factor refinement ( and probably
having a low symmetry SG).
R merge of 80% may be OK if I/sig for high res shell is >2.
Yes, I used anisotropic Bfactors and the space group is P1 21 1. However, the I/sig is only 1.5 in the highest shell. Cutting the data such that the I/sig is >2 has improved the R factors. Thank you.
Maps get worse.... Could it be when you use all resolution range you get
59% of missing reflections in highest resolution shell filled in with
DFc for the purpose of map calculation?
Yes! the map that I was looking at was filled.