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Hi - you need to pick a lut name from $FSLDIR/etc/luts/ and use that without the .lut part. Steve. On 4 Jul 2013, at 16:14, Fatemeh Geranmayeh <[log in to unmask]> wrote: > Dear Experts. I want to use the slicer command to slice every 5th slice of a statistical image with the Red-Yellow colour map. > > when using the following command line, the slicer works well, except the colour remains greyscale as in the header. Can you please help? I also want to display this on a standard brain before slicing, but the slicer command doesn't allow for this option. Can you advise how to do this? > > slicer inputimage.nii.gz -l "Red-Yellow" -S 5 3000 outputfile > > Regards, > Fatemeh > --------------------------------------------------------------------------- Stephen M. Smith, Professor of Biomedical Engineering Associate Director, Oxford University FMRIB Centre FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK +44 (0) 1865 222726 (fax 222717) [log in to unmask] http://www.fmrib.ox.ac.uk/~steve --------------------------------------------------------------------------- Stop the cultural destruction of Tibet