Dear Chuck,

the data is not in .dicom extension. The files are in brucket format which consists of 2dseq pid etc files. 

I already tried MRIConvert, but it doesnt recognize the format, since it expect dicom as input.

Any other suggestion ?

best,

Qasim

Qasim Bukhari

Research Assistant and Doctoral Candidate

Institute for Biomedical Engineering

ETH and University Zurich

Wolfgang-Pauli-Strasse 27, HIT E22

webpages: MR-page

http://www.biomed.ee.ethz.ch/people/sybukhar

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Date: Wed, 19 Jun 2013 09:48:01 -0700
From: [log in to unmask]
To: [log in to unmask]
CC: [log in to unmask]
Subject: Re: [FSL] Brucker to NIFTI conversion

Hello Qasim,

There are a number of fine DICOM to NIfTI converters available including DCMTK's dcm2nii and the University of Oregon Lewis Center's MRIConvert.

Regards,
Chuck


On 06/19/2013 08:52 AM, Qasim Bukhari wrote:

Dear all,

I have brucker raw data, 2dseq and fid files and now no more access to the scanner. I was trying to convert these files to NIFTI, however there are only softwares to convert in to Analyze format. Unfortunately converting in to Analyze, I m loosing information like voxel size. Is it some software to autodetect the voxel size information or may be a way to calculate it from other values ?

Thanks and best,

Qasim

Qasim Bukhari

Research Assistant and Doctoral Candidate

Institute for Biomedical Engineering

ETH and University Zurich

Wolfgang-Pauli-Strasse 27, HIT E22

webpages: MR-page

http://www.biomed.ee.ethz.ch/people/sybukhar

-- 
Chuck Theobald
System Administrator
The Robert and Beverly Lewis Center for Neuroimaging
University of Oregon
P: 541-346-0343
F: 541-346-0345