Hi,
Instead of using fslroi, which crops the image, you can use the
-roi option in fslmaths, which zeroes everything outside the roi.
Anyhow, this produces a cubic mask, if this is what you need.
good luck,
wolf
On 06/03/2013 02:28 PM, LAOUCHEDI MAKHLOUF wrote:
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hi all
i used fslroi on a brainstem binary mask (that i
extracted from freesurfer) to extract the pons :
fslroi tcpr1_mask.nii.gz pons.nii.gz 0 255 153
26 0 255.
the result is of course a mask of the pons but of just 26
slices in the y direction
How can i produce a mask of the pons (extracted from the
brainstem) with the same dimensions (256x256x256) as the
brainstem mask
thanks for help
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