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I have a structure that I am trying to finish off, I have Zn ligated by four cys residues.
I use the linkR and define distances (the same link for each ZnS bond)
My issue is how to stop the structure moving to a square pyramid (consistent with distance restraints) rather than a tetrahedral geometry. 
Can anyone help?

best
Jim

Jim Naismith
BSRC, North Haugh
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