Hi,
I have trouble to judge the quality of a registration result. I registered an fMRI scan (acquired with 3x3x3 resolution, large field of view) to 1mm MNI standard space via a high resolution mprage (roughly 1x1x1 resolution). I used normal search, 12 DoF for
the mprage and for the standard brain. I checked non-linear for the registration to standard space. The registration of the functional data to the standard brain (and also to the mprage) don't look good (see attached image) compared to what I have seen before
using another imaging program. Am I too picky or is there a way to get better results? Could the poor quality be related to an error message that I get when I load in the data? It says: Warning - have auto-set BET preprocessing option and/or registration DoF
on the basis of image fields-of-view; check settings.
Maren
