Dear FSL users,
I have been using the autoaq command and get the following output (as below).The atlas query website suggested the number indicated is a number from 0-100 and can be interpreted as percentages. So it indicates how probable the tract is affected if I am using an white matter atlas in this case?I do realized it does not add up to 100 and the each number is relatively small (mostly less than 1), therefore, I am not sure how exactly should I be interpreting this.I would be grateful if anyone can shed some light on this.Thanks,BonnieCluster Index Voxels MAX MAX X (mm) MAX Y (mm) MAX Z (mm) COG X (mm) COG Y (mm) COG Z (mm)
1 49015 0.999 -11 28 -10 -1.21 -2.72 15.1
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Structures to which each cluster peak belongs to:
-1.21,-2.72,15.1,JHU White-Matter Tractography Atlas,No label found!
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Structures to which each cluster belongs to:Cluster #1
Anterior thalamic radiation L:1.57023
Anterior thalamic radiation R:0.961991
Corticospinal tract L:0.401183
Corticospinal tract R:0.172784
Cingulum (cingulate gyrus) L:0.66753
Cingulum (cingulate gyrus) R:0.336693
Cingulum (hippocampus) L:0.0125676
Cingulum (hippocampus) R:0.0311741
Forceps major:0.576497
Forceps minor:4.75193
Inferior fronto-occipital fasciculus L:1.87979
Inferior fronto-occipital fasciculus R:2.00002
Inferior longitudinal fasciculus L:1.0455
Inferior longitudinal fasciculus R:1.06078
Superior longitudinal fasciculus L:2.07728
Superior longitudinal fasciculus R:1.4285
Uncinate fasciculus L:1.0639
Uncinate fasciculus R:0.515352
Superior longitudinal fasciculus (temporal part) L:0.936081
Superior longitudinal fasciculus (temporal part) R:0.466From: "Nucleos P" <[log in to unmask]>
To: [log in to unmask]
Sent: Thursday, April 4, 2013 8:31:25 AM
Subject: Re: [FSL] autoaq atlas queryBest,Hi Christophe -Thank you very much!
CatherineOn Wed, Apr 3, 2013 at 4:43 PM, Christophe Bedetti <[log in to unmask]> wrote:
Hi Catherine,You can find it from the blog of the author with a lot of other useful brain imaging information.ChristopheOn 3 April 2013 14:14, SUBSCRIBE FSL Nucleos <[log in to unmask]> wrote:
Hello FSLers,
Where can I find the autoaq script? I would like to add this to my bin.
Thanks,
Catherine
--Bonnie Yin Ka Lam
PhD Candidate
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