Hi,

I saw no other mails in this thread so this might be out of context, but the errors seem to indicate that you have no atlases installed. Try:

sudo apt-get install fsl-atlases

If you are on Ubuntu, you need to enable the NeuroDebian repo for this to work.

Michael


On Sun, May 5, 2013 at 7:13 PM, Rosalia Dacosta Aguayo <[log in to unmask]> wrote:
Hi,

If anyone has the same problem I have been having....once you have set the path and exported in the .baschrc file....in the terminal you have to type chmo a+x in order to make it executable...otherwise...it will not work.

But now, (sorry for posting so many mails in the mailing list) once I have reach the mountain....I have found a lot of trees I guess that have to do with the script and I thing this is beyond my little level....this is what appears ( I think the paths are not well defined and the software can not find them...)

** ERROR (nifti_image_read): failed to find header file for '/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm'
** ERROR: nifti_image_open(/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm): bad header info
ERROR: failed to open file /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm
Cannot open volume /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm for reading!
** ERROR (nifti_image_read): failed to find header file for '/tmp/ztmp_27699'
** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info
ERROR: failed to open file /tmp/ztmp_27699
ERROR: Could not open image /tmp/ztmp_27699
Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz
./fsl_atlasing.sh: line 74: [: -gt: unary operator expected
rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory
** ERROR (nifti_image_read): failed to find header file for '/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm'
** ERROR: nifti_image_open(/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm): bad header info
ERROR: failed to open file /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm
Cannot open volume /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm for reading!
** ERROR (nifti_image_read): failed to find header file for '/tmp/ztmp_27699'
** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info
ERROR: failed to open file /tmp/ztmp_27699
ERROR: Could not open image /tmp/ztmp_27699
Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz
./fsl_atlasing.sh: line 67: [: -gt: unary operator expected
rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory
** ERROR (nifti_image_read): failed to find header file for '/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm'
** ERROR: nifti_image_open(/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm): bad header info
ERROR: failed to open file /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm
Cannot open volume /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm for reading!
** ERROR (nifti_image_read): failed to find header file for '/tmp/ztmp_27699'
** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info
ERROR: failed to open file /tmp/ztmp_27699
ERROR: Could not open image /tmp/ztmp_27699
Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz
./fsl_atlasing.sh: line 74: [: -gt: unary operator expected
rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory
** ERROR (nifti_image_read): failed to find header file for '/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm'
** ERROR: nifti_image_open(/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm): bad header info
ERROR: failed to open file /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm
Cannot open volume /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm for reading!
** ERROR (nifti_image_read): failed to find header file for '/tmp/ztmp_27699'
** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info
ERROR: failed to open file /tmp/ztmp_27699
ERROR: Could not open image /tmp/ztmp_27699
Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz
./fsl_atlasing.sh: line 67: [: -gt: unary operator expected
rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory
** ERROR (nifti_image_read): failed to find header file for '/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm'
** ERROR: nifti_image_open(/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm): bad header info
ERROR: failed to open file /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm
Cannot open volume /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm for reading!
** ERROR (nifti_image_read): failed to find header file for '/tmp/ztmp_27699'
** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info
ERROR: failed to open file /tmp/ztmp_27699
ERROR: Could not open image /tmp/ztmp_27699
Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz
./fsl_atlasing.sh: line 74: [: -gt: unary operator expected
rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory
** ERROR (nifti_image_read): failed to find header file for '/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm'
** ERROR: nifti_image_open(/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm): bad header info
ERROR: failed to open file /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm
Cannot open volume /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm for reading!
** ERROR (nifti_image_read): failed to find header file for '/tmp/ztmp_27699'
** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info
ERROR: failed to open file /tmp/ztmp_27699
ERROR: Could not open image /tmp/ztmp_27699
Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz
./fsl_atlasing.sh: line 67: [: -gt: unary operator expected
rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory
** ERROR (nifti_image_read): failed to find header file for '/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm'
** ERROR: nifti_image_open(/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm): bad header info
ERROR: failed to open file /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm
Cannot open volume /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm for reading!
** ERROR (nifti_image_read): failed to find header file for '/tmp/ztmp_27699'
** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info
ERROR: failed to open file /tmp/ztmp_27699
ERROR: Could not open image /tmp/ztmp_27699
Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz
./fsl_atlasing.sh: line 74: [: -gt: unary operator expected
rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory
** ERROR (nifti_image_read): failed to find header file for '/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm'
** ERROR: nifti_image_open(/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm): bad header info
ERROR: failed to open file /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm
Cannot open volume /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm for reading!
** ERROR (nifti_image_read): failed to find header file for '/tmp/ztmp_27699'
** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info
ERROR: failed to open file /tmp/ztmp_27699
ERROR: Could not open image /tmp/ztmp_27699
Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz
./fsl_atlasing.sh: line 67: [: -gt: unary operator expected
rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory
** ERROR (nifti_image_read): failed to find header file for '/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm'
** ERROR: nifti_image_open(/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm): bad header info
ERROR: failed to open file /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm
Cannot open volume /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm for reading!
** ERROR (nifti_image_read): failed to find header file for '/tmp/ztmp_27699'
** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info
ERROR: failed to open file /tmp/ztmp_27699
ERROR: Could not open image /tmp/ztmp_27699
Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz
./fsl_atlasing.sh: line 74: [: -gt: unary operator expected
rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory
** ERROR (nifti_image_read): failed to find header file for '/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm'
** ERROR: nifti_image_open(/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm): bad header info
ERROR: failed to open file /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm
Cannot open volume /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm for reading!
** ERROR (nifti_image_read): failed to find header file for '/tmp/ztmp_27699'
** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info
ERROR: failed to open file /tmp/ztmp_27699
ERROR: Could not open image /tmp/ztmp_27699
Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz
./fsl_atlasing.sh: line 67: [: -gt: unary operator expected
rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory
** ERROR (nifti_image_read): failed to find header file for '/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm'
** ERROR: nifti_image_open(/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm): bad header info
ERROR: failed to open file /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm
Cannot open volume /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm for reading!
** ERROR (nifti_image_read): failed to find header file for '/tmp/ztmp_27699'
** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info
ERROR: failed to open file /tmp/ztmp_27699
ERROR: Could not open image /tmp/ztmp_27699
Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz
./fsl_atlasing.sh: line 74: [: -gt: unary operator expected
rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory
** ERROR (nifti_image_read): failed to find header file for '/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm'
** ERROR: nifti_image_open(/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm): bad header info
ERROR: failed to open file /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm
Cannot open volume /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm for reading!
** ERROR (nifti_image_read): failed to find header file for '/tmp/ztmp_27699'
** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info
ERROR: failed to open file /tmp/ztmp_27699
ERROR: Could not open image /tmp/ztmp_27699
Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz
./fsl_atlasing.sh: line 67: [: -gt: unary operator expected
rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory
** ERROR (nifti_image_read): failed to find header file for '/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm'
** ERROR: nifti_image_open(/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm): bad header info
ERROR: failed to open file /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm
Cannot open volume /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm for reading!
** ERROR (nifti_image_read): failed to find header file for '/tmp/ztmp_27699'
** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info
ERROR: failed to open file /tmp/ztmp_27699
ERROR: Could not open image /tmp/ztmp_27699
Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz
./fsl_atlasing.sh: line 74: [: -gt: unary operator expected
rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory
** ERROR (nifti_image_read): failed to find header file for '/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm'
** ERROR: nifti_image_open(/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm): bad header info
ERROR: failed to open file /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm
Cannot open volume /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm for reading!
** ERROR (nifti_image_read): failed to find header file for '/tmp/ztmp_27699'
** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info
ERROR: failed to open file /tmp/ztmp_27699
ERROR: Could not open image /tmp/ztmp_27699
Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz
./fsl_atlasing.sh: line 83: [: -gt: unary operator expected
rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory
** ERROR (nifti_image_read): failed to find header file for '/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm'
** ERROR: nifti_image_open(/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm): bad header info
ERROR: failed to open file /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm
Cannot open volume /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm for reading!
** ERROR (nifti_image_read): failed to find header file for '/tmp/ztmp_27699'
** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info
ERROR: failed to open file /tmp/ztmp_27699
ERROR: Could not open image /tmp/ztmp_27699
Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz
./fsl_atlasing.sh: line 83: [: -gt: unary operator expected
rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory
** ERROR (nifti_image_read): failed to find header file for '/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm'
** ERROR: nifti_image_open(/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm): bad header info
ERROR: failed to open file /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm
Cannot open volume /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm for reading!
** ERROR (nifti_image_read): failed to find header file for '/tmp/ztmp_27699'
** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info
ERROR: failed to open file /tmp/ztmp_27699
ERROR: Could not open image /tmp/ztmp_27699
Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz
./fsl_atlasing.sh: line 83: [: -gt: unary operator expected
rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory
** ERROR (nifti_image_read): failed to find header file for '/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm'
** ERROR: nifti_image_open(/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm): bad header info
ERROR: failed to open file /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm
Cannot open volume /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm for reading!
** ERROR (nifti_image_read): failed to find header file for '/tmp/ztmp_27699'
** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info
ERROR: failed to open file /tmp/ztmp_27699
ERROR: Could not open image /tmp/ztmp_27699
Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz
./fsl_atlasing.sh: line 83: [: -gt: unary operator expected
rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory
** ERROR (nifti_image_read): failed to find header file for '/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm'
** ERROR: nifti_image_open(/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm): bad header info
ERROR: failed to open file /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm
Cannot open volume /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm for reading!
** ERROR (nifti_image_read): failed to find header file for '/tmp/ztmp_27699'
** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info
ERROR: failed to open file /tmp/ztmp_27699
ERROR: Could not open image /tmp/ztmp_27699
Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz
./fsl_atlasing.sh: line 83: [: -gt: unary operator expected
rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory
** ERROR (nifti_image_read): failed to find header file for '/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm'
** ERROR: nifti_image_open(/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm): bad header info
ERROR: failed to open file /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm
Cannot open volume /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm for reading!
** ERROR (nifti_image_read): failed to find header file for '/tmp/ztmp_27699'
** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info
ERROR: failed to open file /tmp/ztmp_27699
ERROR: Could not open image /tmp/ztmp_27699
Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz
./fsl_atlasing.sh: line 83: [: -gt: unary operator expected
rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory
** ERROR (nifti_image_read): failed to find header file for '/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm'
** ERROR: nifti_image_open(/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm): bad header info
ERROR: failed to open file /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm
Cannot open volume /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm for reading!
** ERROR (nifti_image_read): failed to find header file for '/tmp/ztmp_27699'
** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info
ERROR: failed to open file /tmp/ztmp_27699
ERROR: Could not open image /tmp/ztmp_27699
Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz
./fsl_atlasing.sh: line 83: [: -gt: unary operator expected
rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory
** ERROR (nifti_image_read): failed to find header file for '/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm'
** ERROR: nifti_image_open(/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm): bad header info
ERROR: failed to open file /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm
Cannot open volume /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm for reading!
** ERROR (nifti_image_read): failed to find header file for '/tmp/ztmp_27699'
** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info
ERROR: failed to open file /tmp/ztmp_27699
ERROR: Could not open image /tmp/ztmp_27699
Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz
./fsl_atlasing.sh: line 83: [: -gt: unary operator expected
rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory
** ERROR (nifti_image_read): failed to find header file for '/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm'
** ERROR: nifti_image_open(/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm): bad header info
ERROR: failed to open file /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm
Cannot open volume /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm for reading!
** ERROR (nifti_image_read): failed to find header file for '/tmp/ztmp_27699'
** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info
ERROR: failed to open file /tmp/ztmp_27699
ERROR: Could not open image /tmp/ztmp_27699
Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz
./fsl_atlasing.sh: line 83: [: -gt: unary operator expected
rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory
** ERROR (nifti_image_read): failed to find header file for '/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm'
** ERROR: nifti_image_open(/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm): bad header info
ERROR: failed to open file /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm
Cannot open volume /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm for reading!
** ERROR (nifti_image_read): failed to find header file for '/tmp/ztmp_27699'
** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info
ERROR: failed to open file /tmp/ztmp_27699
ERROR: Could not open image /tmp/ztmp_27699
Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz
./fsl_atlasing.sh: line 83: [: -gt: unary operator expected
rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory
** ERROR (nifti_image_read): failed to find header file for '/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm'
** ERROR: nifti_image_open(/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm): bad header info
ERROR: failed to open file /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm
Cannot open volume /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm for reading!
** ERROR (nifti_image_read): failed to find header file for '/tmp/ztmp_27699'
** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info
ERROR: failed to open file /tmp/ztmp_27699
ERROR: Could not open image /tmp/ztmp_27699
Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz
./fsl_atlasing.sh: line 83: [: -gt: unary operator expected
rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory
** ERROR (nifti_image_read): failed to find header file for '/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm'
** ERROR: nifti_image_open(/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm): bad header info
ERROR: failed to open file /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm
Cannot open volume /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm for reading!
** ERROR (nifti_image_read): failed to find header file for '/tmp/ztmp_27699'
** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info
ERROR: failed to open file /tmp/ztmp_27699
ERROR: Could not open image /tmp/ztmp_27699
Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz
./fsl_atlasing.sh: line 83: [: -gt: unary operator expected
rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory
** ERROR (nifti_image_read): failed to find header file for '/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm'
** ERROR: nifti_image_open(/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm): bad header info
ERROR: failed to open file /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm
Cannot open volume /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm for reading!
** ERROR (nifti_image_read): failed to find header file for '/tmp/ztmp_27699'
** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info
ERROR: failed to open file /tmp/ztmp_27699
ERROR: Could not open image /tmp/ztmp_27699
Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz
./fsl_atlasing.sh: line 83: [: -gt: unary operator expected
rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory
** ERROR (nifti_image_read): failed to find header file for '/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm'
** ERROR: nifti_image_open(/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm): bad header info
ERROR: failed to open file /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm
Cannot open volume /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm for reading!
** ERROR (nifti_image_read): failed to find header file for '/tmp/ztmp_27699'
** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info
ERROR: failed to open file /tmp/ztmp_27699
ERROR: Could not open image /tmp/ztmp_27699
Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz
./fsl_atlasing.sh: line 83: [: -gt: unary operator expected
rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory
** ERROR (nifti_image_read): failed to find header file for '/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm'
** ERROR: nifti_image_open(/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm): bad header info
ERROR: failed to open file /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm
Cannot open volume /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm for reading!
** ERROR (nifti_image_read): failed to find header file for '/tmp/ztmp_27699'
** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info
ERROR: failed to open file /tmp/ztmp_27699
ERROR: Could not open image /tmp/ztmp_27699
Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz
./fsl_atlasing.sh: line 83: [: -gt: unary operator expected
rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory
** ERROR (nifti_image_read): failed to find header file for '/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm'
** ERROR: nifti_image_open(/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm): bad header info
ERROR: failed to open file /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm
Cannot open volume /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm for reading!
** ERROR (nifti_image_read): failed to find header file for '/tmp/ztmp_27699'
** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info
ERROR: failed to open file /tmp/ztmp_27699
ERROR: Could not open image /tmp/ztmp_27699
Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz
./fsl_atlasing.sh: line 83: [: -gt: unary operator expected
rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory
** ERROR (nifti_image_read): failed to find header file for '/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm'
** ERROR: nifti_image_open(/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm): bad header info
ERROR: failed to open file /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm
Cannot open volume /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm for reading!
** ERROR (nifti_image_read): failed to find header file for '/tmp/ztmp_27699'
** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info
ERROR: failed to open file /tmp/ztmp_27699
ERROR: Could not open image /tmp/ztmp_27699
Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz
./fsl_atlasing.sh: line 83: [: -gt: unary operator expected
rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory
** ERROR (nifti_image_read): failed to find header file for '/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm'
** ERROR: nifti_image_open(/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm): bad header info
ERROR: failed to open file /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm
Cannot open volume /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm for reading!
** ERROR (nifti_image_read): failed to find header file for '/tmp/ztmp_27699'
** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info
ERROR: failed to open file /tmp/ztmp_27699
ERROR: Could not open image /tmp/ztmp_27699
Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz
./fsl_atlasing.sh: line 83: [: -gt: unary operator expected
rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory
** ERROR (nifti_image_read): failed to find header file for '/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm'
** ERROR: nifti_image_open(/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm): bad header info
ERROR: failed to open file /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm
Cannot open volume /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm for reading!
** ERROR (nifti_image_read): failed to find header file for '/tmp/ztmp_27699'
** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info
ERROR: failed to open file /tmp/ztmp_27699
ERROR: Could not open image /tmp/ztmp_27699
Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz
./fsl_atlasing.sh: line 83: [: -gt: unary operator expected
rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory
** ERROR (nifti_image_read): failed to find header file for '/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm'
** ERROR: nifti_image_open(/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm): bad header info
ERROR: failed to open file /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm
Cannot open volume /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm for reading!
** ERROR (nifti_image_read): failed to find header file for '/tmp/ztmp_27699'
** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info
ERROR: failed to open file /tmp/ztmp_27699
ERROR: Could not open image /tmp/ztmp_27699
Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz
./fsl_atlasing.sh: line 83: [: -gt: unary operator expected
rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory
** ERROR (nifti_image_read): failed to find header file for '/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm'
** ERROR: nifti_image_open(/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm): bad header info
ERROR: failed to open file /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm
Cannot open volume /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm for reading!
** ERROR (nifti_image_read): failed to find header file for '/tmp/ztmp_27699'
** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info
ERROR: failed to open file /tmp/ztmp_27699
ERROR: Could not open image /tmp/ztmp_27699
Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz
./fsl_atlasing.sh: line 83: [: -gt: unary operator expected
rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory
rosi@rosi-HP-Pavilion-dv9700-Notebook-PC:~/Desktop/TBSS_PAPER/TBSS_TWO_GROUPS_RD_AD_FA/mytbss/stats/TWO_GROUPS_RD_TTEST/TWO_GROUPS_RD_LEFT_TTEST$


Simply horrible....please...any help would be very appreciate...
Best regards,
Rosalia.



--
Michael Hanke
http://mih.voxindeserto.de