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Hi, I saw no other mails in this thread so this might be out of context, but the errors seem to indicate that you have no atlases installed. Try: sudo apt-get install fsl-atlases If you are on Ubuntu, you need to enable the NeuroDebian repo for this to work. Michael On Sun, May 5, 2013 at 7:13 PM, Rosalia Dacosta Aguayo <[log in to unmask]>wrote: > Hi, > > If anyone has the same problem I have been having....once you have set the > path and exported in the .baschrc file....in the terminal you have to type > chmo a+x in order to make it executable...otherwise...it will not work. > > But now, (sorry for posting so many mails in the mailing list) once I have > reach the mountain....I have found a lot of trees I guess that have to do > with the script and I thing this is beyond my little level....this is what > appears ( I think the paths are not well defined and the software can not > find them...) > > ** ERROR (nifti_image_read): failed to find header file for > '/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm' > ** ERROR: > nifti_image_open(/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm): > bad header info > ERROR: failed to open file > /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm > Cannot open volume > /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm for > reading! > ** ERROR (nifti_image_read): failed to find header file for > '/tmp/ztmp_27699' > ** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info > ERROR: failed to open file /tmp/ztmp_27699 > ERROR: Could not open image /tmp/ztmp_27699 > Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz > ./fsl_atlasing.sh: line 74: [: -gt: unary operator expected > rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory > ** ERROR (nifti_image_read): failed to find header file for > '/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm' > ** ERROR: > nifti_image_open(/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm): > bad header info > ERROR: failed to open file > /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm > Cannot open volume > /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm for > reading! > ** ERROR (nifti_image_read): failed to find header file for > '/tmp/ztmp_27699' > ** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info > ERROR: failed to open file /tmp/ztmp_27699 > ERROR: Could not open image /tmp/ztmp_27699 > Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz > ./fsl_atlasing.sh: line 67: [: -gt: unary operator expected > rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory > ** ERROR (nifti_image_read): failed to find header file for > '/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm' > ** ERROR: > nifti_image_open(/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm): > bad header info > ERROR: failed to open file > /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm > Cannot open volume > /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm for > reading! > ** ERROR (nifti_image_read): failed to find header file for > '/tmp/ztmp_27699' > ** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info > ERROR: failed to open file /tmp/ztmp_27699 > ERROR: Could not open image /tmp/ztmp_27699 > Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz > ./fsl_atlasing.sh: line 74: [: -gt: unary operator expected > rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory > ** ERROR (nifti_image_read): failed to find header file for > '/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm' > ** ERROR: > nifti_image_open(/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm): > bad header info > ERROR: failed to open file > /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm > Cannot open volume > /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm for > reading! > ** ERROR (nifti_image_read): failed to find header file for > '/tmp/ztmp_27699' > ** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info > ERROR: failed to open file /tmp/ztmp_27699 > ERROR: Could not open image /tmp/ztmp_27699 > Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz > ./fsl_atlasing.sh: line 67: [: -gt: unary operator expected > rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory > ** ERROR (nifti_image_read): failed to find header file for > '/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm' > ** ERROR: > nifti_image_open(/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm): > bad header info > ERROR: failed to open file > /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm > Cannot open volume > /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm for > reading! > ** ERROR (nifti_image_read): failed to find header file for > '/tmp/ztmp_27699' > ** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info > ERROR: failed to open file /tmp/ztmp_27699 > ERROR: Could not open image /tmp/ztmp_27699 > Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz > ./fsl_atlasing.sh: line 74: [: -gt: unary operator expected > rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory > ** ERROR (nifti_image_read): failed to find header file for > '/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm' > ** ERROR: > nifti_image_open(/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm): > bad header info > ERROR: failed to open file > /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm > Cannot open volume > /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm for > reading! > ** ERROR (nifti_image_read): failed to find header file for > '/tmp/ztmp_27699' > ** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info > ERROR: failed to open file /tmp/ztmp_27699 > ERROR: Could not open image /tmp/ztmp_27699 > Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz > ./fsl_atlasing.sh: line 67: [: -gt: unary operator expected > rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory > ** ERROR (nifti_image_read): failed to find header file for > '/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm' > ** ERROR: > nifti_image_open(/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm): > bad header info > ERROR: failed to open file > /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm > Cannot open volume > /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm for > reading! > ** ERROR (nifti_image_read): failed to find header file for > '/tmp/ztmp_27699' > ** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info > ERROR: failed to open file /tmp/ztmp_27699 > ERROR: Could not open image /tmp/ztmp_27699 > Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz > ./fsl_atlasing.sh: line 74: [: -gt: unary operator expected > rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory > ** ERROR (nifti_image_read): failed to find header file for > '/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm' > ** ERROR: > nifti_image_open(/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm): > bad header info > ERROR: failed to open file > /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm > Cannot open volume > /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm for > reading! > ** ERROR (nifti_image_read): failed to find header file for > '/tmp/ztmp_27699' > ** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info > ERROR: failed to open file /tmp/ztmp_27699 > ERROR: Could not open image /tmp/ztmp_27699 > Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz > ./fsl_atlasing.sh: line 67: [: -gt: unary operator expected > rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory > ** ERROR (nifti_image_read): failed to find header file for > '/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm' > ** ERROR: > nifti_image_open(/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm): > bad header info > ERROR: failed to open file > /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm > Cannot open volume > /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm for > reading! > ** ERROR (nifti_image_read): failed to find header file for > '/tmp/ztmp_27699' > ** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info > ERROR: failed to open file /tmp/ztmp_27699 > ERROR: Could not open image /tmp/ztmp_27699 > Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz > ./fsl_atlasing.sh: line 74: [: -gt: unary operator expected > rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory > ** ERROR (nifti_image_read): failed to find header file for > '/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm' > ** ERROR: > nifti_image_open(/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm): > bad header info > ERROR: failed to open file > /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm > Cannot open volume > /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm for > reading! > ** ERROR (nifti_image_read): failed to find header file for > '/tmp/ztmp_27699' > ** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info > ERROR: failed to open file /tmp/ztmp_27699 > ERROR: Could not open image /tmp/ztmp_27699 > Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz > ./fsl_atlasing.sh: line 67: [: -gt: unary operator expected > rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory > ** ERROR (nifti_image_read): failed to find header file for > '/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm' > ** ERROR: > nifti_image_open(/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm): > bad header info > ERROR: failed to open file > /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm > Cannot open volume > /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm for > reading! > ** ERROR (nifti_image_read): failed to find header file for > '/tmp/ztmp_27699' > ** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info > ERROR: failed to open file /tmp/ztmp_27699 > ERROR: Could not open image /tmp/ztmp_27699 > Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz > ./fsl_atlasing.sh: line 74: [: -gt: unary operator expected > rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory > ** ERROR (nifti_image_read): failed to find header file for > '/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm' > ** ERROR: > nifti_image_open(/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm): > bad header info > ERROR: failed to open file > /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm > Cannot open volume > /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm for > reading! > ** ERROR (nifti_image_read): failed to find header file for > '/tmp/ztmp_27699' > ** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info > ERROR: failed to open file /tmp/ztmp_27699 > ERROR: Could not open image /tmp/ztmp_27699 > Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz > ./fsl_atlasing.sh: line 67: [: -gt: unary operator expected > rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory > ** ERROR (nifti_image_read): failed to find header file for > '/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm' > ** ERROR: > nifti_image_open(/usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm): > bad header info > ERROR: failed to open file > /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm > Cannot open volume > /usr/share/fsl/4.1/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-0mm for > reading! > ** ERROR (nifti_image_read): failed to find header file for > '/tmp/ztmp_27699' > ** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info > ERROR: failed to open file /tmp/ztmp_27699 > ERROR: Could not open image /tmp/ztmp_27699 > Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz > ./fsl_atlasing.sh: line 74: [: -gt: unary operator expected > rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory > ** ERROR (nifti_image_read): failed to find header file for > '/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm' > ** ERROR: > nifti_image_open(/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm): > bad header info > ERROR: failed to open file > /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm > Cannot open volume > /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm > for reading! > ** ERROR (nifti_image_read): failed to find header file for > '/tmp/ztmp_27699' > ** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info > ERROR: failed to open file /tmp/ztmp_27699 > ERROR: Could not open image /tmp/ztmp_27699 > Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz > ./fsl_atlasing.sh: line 83: [: -gt: unary operator expected > rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory > ** ERROR (nifti_image_read): failed to find header file for > '/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm' > ** ERROR: > nifti_image_open(/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm): > bad header info > ERROR: failed to open file > /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm > Cannot open volume > /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm > for reading! > ** ERROR (nifti_image_read): failed to find header file for > '/tmp/ztmp_27699' > ** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info > ERROR: failed to open file /tmp/ztmp_27699 > ERROR: Could not open image /tmp/ztmp_27699 > Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz > ./fsl_atlasing.sh: line 83: [: -gt: unary operator expected > rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory > ** ERROR (nifti_image_read): failed to find header file for > '/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm' > ** ERROR: > nifti_image_open(/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm): > bad header info > ERROR: failed to open file > /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm > Cannot open volume > /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm > for reading! > ** ERROR (nifti_image_read): failed to find header file for > '/tmp/ztmp_27699' > ** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info > ERROR: failed to open file /tmp/ztmp_27699 > ERROR: Could not open image /tmp/ztmp_27699 > Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz > ./fsl_atlasing.sh: line 83: [: -gt: unary operator expected > rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory > ** ERROR (nifti_image_read): failed to find header file for > '/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm' > ** ERROR: > nifti_image_open(/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm): > bad header info > ERROR: failed to open file > /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm > Cannot open volume > /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm > for reading! > ** ERROR (nifti_image_read): failed to find header file for > '/tmp/ztmp_27699' > ** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info > ERROR: failed to open file /tmp/ztmp_27699 > ERROR: Could not open image /tmp/ztmp_27699 > Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz > ./fsl_atlasing.sh: line 83: [: -gt: unary operator expected > rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory > ** ERROR (nifti_image_read): failed to find header file for > '/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm' > ** ERROR: > nifti_image_open(/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm): > bad header info > ERROR: failed to open file > /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm > Cannot open volume > /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm > for reading! > ** ERROR (nifti_image_read): failed to find header file for > '/tmp/ztmp_27699' > ** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info > ERROR: failed to open file /tmp/ztmp_27699 > ERROR: Could not open image /tmp/ztmp_27699 > Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz > ./fsl_atlasing.sh: line 83: [: -gt: unary operator expected > rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory > ** ERROR (nifti_image_read): failed to find header file for > '/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm' > ** ERROR: > nifti_image_open(/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm): > bad header info > ERROR: failed to open file > /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm > Cannot open volume > /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm > for reading! > ** ERROR (nifti_image_read): failed to find header file for > '/tmp/ztmp_27699' > ** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info > ERROR: failed to open file /tmp/ztmp_27699 > ERROR: Could not open image /tmp/ztmp_27699 > Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz > ./fsl_atlasing.sh: line 83: [: -gt: unary operator expected > rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory > ** ERROR (nifti_image_read): failed to find header file for > '/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm' > ** ERROR: > nifti_image_open(/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm): > bad header info > ERROR: failed to open file > /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm > Cannot open volume > /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm > for reading! > ** ERROR (nifti_image_read): failed to find header file for > '/tmp/ztmp_27699' > ** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info > ERROR: failed to open file /tmp/ztmp_27699 > ERROR: Could not open image /tmp/ztmp_27699 > Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz > ./fsl_atlasing.sh: line 83: [: -gt: unary operator expected > rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory > ** ERROR (nifti_image_read): failed to find header file for > '/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm' > ** ERROR: > nifti_image_open(/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm): > bad header info > ERROR: failed to open file > /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm > Cannot open volume > /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm > for reading! > ** ERROR (nifti_image_read): failed to find header file for > '/tmp/ztmp_27699' > ** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info > ERROR: failed to open file /tmp/ztmp_27699 > ERROR: Could not open image /tmp/ztmp_27699 > Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz > ./fsl_atlasing.sh: line 83: [: -gt: unary operator expected > rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory > ** ERROR (nifti_image_read): failed to find header file for > '/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm' > ** ERROR: > nifti_image_open(/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm): > bad header info > ERROR: failed to open file > /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm > Cannot open volume > /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm > for reading! > ** ERROR (nifti_image_read): failed to find header file for > '/tmp/ztmp_27699' > ** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info > ERROR: failed to open file /tmp/ztmp_27699 > ERROR: Could not open image /tmp/ztmp_27699 > Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz > ./fsl_atlasing.sh: line 83: [: -gt: unary operator expected > rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory > ** ERROR (nifti_image_read): failed to find header file for > '/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm' > ** ERROR: > nifti_image_open(/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm): > bad header info > ERROR: failed to open file > /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm > Cannot open volume > /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm > for reading! > ** ERROR (nifti_image_read): failed to find header file for > '/tmp/ztmp_27699' > ** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info > ERROR: failed to open file /tmp/ztmp_27699 > ERROR: Could not open image /tmp/ztmp_27699 > Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz > ./fsl_atlasing.sh: line 83: [: -gt: unary operator expected > rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory > ** ERROR (nifti_image_read): failed to find header file for > '/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm' > ** ERROR: > nifti_image_open(/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm): > bad header info > ERROR: failed to open file > /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm > Cannot open volume > /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm > for reading! > ** ERROR (nifti_image_read): failed to find header file for > '/tmp/ztmp_27699' > ** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info > ERROR: failed to open file /tmp/ztmp_27699 > ERROR: Could not open image /tmp/ztmp_27699 > Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz > ./fsl_atlasing.sh: line 83: [: -gt: unary operator expected > rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory > ** ERROR (nifti_image_read): failed to find header file for > '/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm' > ** ERROR: > nifti_image_open(/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm): > bad header info > ERROR: failed to open file > /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm > Cannot open volume > /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm > for reading! > ** ERROR (nifti_image_read): failed to find header file for > '/tmp/ztmp_27699' > ** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info > ERROR: failed to open file /tmp/ztmp_27699 > ERROR: Could not open image /tmp/ztmp_27699 > Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz > ./fsl_atlasing.sh: line 83: [: -gt: unary operator expected > rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory > ** ERROR (nifti_image_read): failed to find header file for > '/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm' > ** ERROR: > nifti_image_open(/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm): > bad header info > ERROR: failed to open file > /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm > Cannot open volume > /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm > for reading! > ** ERROR (nifti_image_read): failed to find header file for > '/tmp/ztmp_27699' > ** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info > ERROR: failed to open file /tmp/ztmp_27699 > ERROR: Could not open image /tmp/ztmp_27699 > Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz > ./fsl_atlasing.sh: line 83: [: -gt: unary operator expected > rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory > ** ERROR (nifti_image_read): failed to find header file for > '/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm' > ** ERROR: > nifti_image_open(/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm): > bad header info > ERROR: failed to open file > /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm > Cannot open volume > /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm > for reading! > ** ERROR (nifti_image_read): failed to find header file for > '/tmp/ztmp_27699' > ** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info > ERROR: failed to open file /tmp/ztmp_27699 > ERROR: Could not open image /tmp/ztmp_27699 > Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz > ./fsl_atlasing.sh: line 83: [: -gt: unary operator expected > rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory > ** ERROR (nifti_image_read): failed to find header file for > '/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm' > ** ERROR: > nifti_image_open(/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm): > bad header info > ERROR: failed to open file > /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm > Cannot open volume > /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm > for reading! > ** ERROR (nifti_image_read): failed to find header file for > '/tmp/ztmp_27699' > ** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info > ERROR: failed to open file /tmp/ztmp_27699 > ERROR: Could not open image /tmp/ztmp_27699 > Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz > ./fsl_atlasing.sh: line 83: [: -gt: unary operator expected > rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory > ** ERROR (nifti_image_read): failed to find header file for > '/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm' > ** ERROR: > nifti_image_open(/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm): > bad header info > ERROR: failed to open file > /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm > Cannot open volume > /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm > for reading! > ** ERROR (nifti_image_read): failed to find header file for > '/tmp/ztmp_27699' > ** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info > ERROR: failed to open file /tmp/ztmp_27699 > ERROR: Could not open image /tmp/ztmp_27699 > Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz > ./fsl_atlasing.sh: line 83: [: -gt: unary operator expected > rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory > ** ERROR (nifti_image_read): failed to find header file for > '/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm' > ** ERROR: > nifti_image_open(/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm): > bad header info > ERROR: failed to open file > /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm > Cannot open volume > /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm > for reading! > ** ERROR (nifti_image_read): failed to find header file for > '/tmp/ztmp_27699' > ** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info > ERROR: failed to open file /tmp/ztmp_27699 > ERROR: Could not open image /tmp/ztmp_27699 > Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz > ./fsl_atlasing.sh: line 83: [: -gt: unary operator expected > rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory > ** ERROR (nifti_image_read): failed to find header file for > '/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm' > ** ERROR: > nifti_image_open(/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm): > bad header info > ERROR: failed to open file > /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm > Cannot open volume > /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm > for reading! > ** ERROR (nifti_image_read): failed to find header file for > '/tmp/ztmp_27699' > ** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info > ERROR: failed to open file /tmp/ztmp_27699 > ERROR: Could not open image /tmp/ztmp_27699 > Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz > ./fsl_atlasing.sh: line 83: [: -gt: unary operator expected > rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory > ** ERROR (nifti_image_read): failed to find header file for > '/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm' > ** ERROR: > nifti_image_open(/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm): > bad header info > ERROR: failed to open file > /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm > Cannot open volume > /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm > for reading! > ** ERROR (nifti_image_read): failed to find header file for > '/tmp/ztmp_27699' > ** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info > ERROR: failed to open file /tmp/ztmp_27699 > ERROR: Could not open image /tmp/ztmp_27699 > Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz > ./fsl_atlasing.sh: line 83: [: -gt: unary operator expected > rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory > ** ERROR (nifti_image_read): failed to find header file for > '/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm' > ** ERROR: > nifti_image_open(/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm): > bad header info > ERROR: failed to open file > /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm > Cannot open volume > /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm > for reading! > ** ERROR (nifti_image_read): failed to find header file for > '/tmp/ztmp_27699' > ** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info > ERROR: failed to open file /tmp/ztmp_27699 > ERROR: Could not open image /tmp/ztmp_27699 > Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz > ./fsl_atlasing.sh: line 83: [: -gt: unary operator expected > rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory > ** ERROR (nifti_image_read): failed to find header file for > '/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm' > ** ERROR: > nifti_image_open(/usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm): > bad header info > ERROR: failed to open file > /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm > Cannot open volume > /usr/share/fsl/4.1/data/atlases//HarvardOxford/HarvardOxford-sub-maxprob-thr0-0mm > for reading! > ** ERROR (nifti_image_read): failed to find header file for > '/tmp/ztmp_27699' > ** ERROR: nifti_image_open(/tmp/ztmp_27699): bad header info > ERROR: failed to open file /tmp/ztmp_27699 > ERROR: Could not open image /tmp/ztmp_27699 > Image Exception : #22 :: Failed to read volume /tmp/ztmp_27699.nii.gz > ./fsl_atlasing.sh: line 83: [: -gt: unary operator expected > rm: cannot remove `/tmp/ztmp_27699.nii.gz': No such file or directory > rosi@rosi-HP-Pavilion-dv9700-Notebook-PC:~/Desktop/TBSS_PAPER/TBSS_TWO_GROUPS_RD_AD_FA/mytbss/stats/TWO_GROUPS_RD_TTEST/TWO_GROUPS_RD_LEFT_TTEST$ > > > > Simply horrible....please...any help would be very appreciate... > Best regards, > Rosalia. > -- Michael Hanke http://mih.voxindeserto.de