Sourcing as in including the line ${star}/bin/convert/convert.csh? If so, then yes.
---- Starlink User Support list For list configuration, including subscribing to and unsubscribing from the list, see https://www.jiscmail.ac.uk/cgi-bin/webadmin?A0=STARLINKOn 27 April 2013 00:10, STARLINK automatic digest system <[log in to unmask]> wrote:
There are 2 messages totaling 151 lines in this issue.
Topics of the day:
1. SMURF and Convert scripting (2)
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Date: Fri, 26 Apr 2013 17:18:28 +0100
From: Larry Morgan <[log in to unmask]>
Subject: SMURF and Convert scripting
Hi,
I am trying to run 'makemap' from a script on a bunch of SCUBA 2 files
which are gzipped. This is ok when you do it from the command line so long
as you have initialised 'convert'. However, I am trying to run this on a
cluster which requires submitting the job as a script to a queue. I have
tried initialising convert within the script which would be the normal
solution but that doesn't work, even though convert does get initialised.
I've also tried explicitly adding the convert directory and the various
executables to my path but I'm still not having any success. If I unzip the
files 'manually' first then my script works so it seems to be definitely
down to the call from makemap to convert that is the problem. Any
suggestions?
Thanks for any help.
Cheers
Larry
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------------------------------
Date: Fri, 26 Apr 2013 09:32:03 -0700
From: Tim Jenness <[log in to unmask]>
Subject: Re: SMURF and Convert scripting
are you sourcing the convert.csh file in your script? It sets a bunch of
environment variables.
On Fri, Apr 26, 2013 at 9:18 AM, Larry Morgan <[log in to unmask]> wrote:
> Hi,
> I am trying to run 'makemap' from a script on a bunch of SCUBA 2 files
> which are gzipped. This is ok when you do it from the command line so long
> as you have initialised 'convert'. However, I am trying to run this on a
> cluster which requires submitting the job as a script to a queue. I have
> tried initialising convert within the script which would be the normal
> solution but that doesn't work, even though convert does get initialised.
> I've also tried explicitly adding the convert directory and the various
> executables to my path but I'm still not having any success. If I unzip the
> files 'manually' first then my script works so it seems to be definitely
> down to the call from makemap to convert that is the problem. Any
> suggestions?
> Thanks for any help.
> Cheers
> Larry
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> subscribing to and unsubscribing from the list, see
> https://www.jiscmail.ac.uk/cgi-bin/webadmin?A0=STARLINK
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------------------------------
End of STARLINK Digest - 23 Apr 2013 to 26 Apr 2013 (#2013-35)
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