On Fri, Apr 26, 2013 at 4:21 PM, Larry Morgan <[log in to unmask]> wrote:
> Sourcing as in including the line ${star}/bin/convert/convert.csh? If so,
> then yes.
>
>
>
No, I mean sourcing as in adding a line
source $STARLINK_DIR/bin/convert/convert.csh
Otherwise you are executing convert.csh as a shell script, all the
environment variables are being set in that forked process and then the
process immediately ends and you are back where you started.
> On 27 April 2013 00:10, STARLINK automatic digest system <
> [log in to unmask]> wrote:
>
>> There are 2 messages totaling 151 lines in this issue.
>>
>> Topics of the day:
>>
>> 1. SMURF and Convert scripting (2)
>>
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>> Date: Fri, 26 Apr 2013 17:18:28 +0100
>> From: Larry Morgan <[log in to unmask]>
>> Subject: SMURF and Convert scripting
>>
>> Hi,
>> I am trying to run 'makemap' from a script on a bunch of SCUBA 2 files
>> which are gzipped. This is ok when you do it from the command line so long
>> as you have initialised 'convert'. However, I am trying to run this on a
>> cluster which requires submitting the job as a script to a queue. I have
>> tried initialising convert within the script which would be the normal
>> solution but that doesn't work, even though convert does get initialised.
>> I've also tried explicitly adding the convert directory and the various
>> executables to my path but I'm still not having any success. If I unzip
>> the
>> files 'manually' first then my script works so it seems to be definitely
>> down to the call from makemap to convert that is the problem. Any
>> suggestions?
>> Thanks for any help.
>> Cheers
>> Larry
>>
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>> ------------------------------
>>
>> Date: Fri, 26 Apr 2013 09:32:03 -0700
>> From: Tim Jenness <[log in to unmask]>
>> Subject: Re: SMURF and Convert scripting
>>
>> are you sourcing the convert.csh file in your script? It sets a bunch of
>> environment variables.
>>
>>
>> On Fri, Apr 26, 2013 at 9:18 AM, Larry Morgan <[log in to unmask]>
>> wrote:
>>
>> > Hi,
>> > I am trying to run 'makemap' from a script on a bunch of SCUBA 2 files
>> > which are gzipped. This is ok when you do it from the command line so
>> long
>> > as you have initialised 'convert'. However, I am trying to run this on a
>> > cluster which requires submitting the job as a script to a queue. I have
>> > tried initialising convert within the script which would be the normal
>> > solution but that doesn't work, even though convert does get
>> initialised.
>> > I've also tried explicitly adding the convert directory and the various
>> > executables to my path but I'm still not having any success. If I unzip
>> the
>> > files 'manually' first then my script works so it seems to be definitely
>> > down to the call from makemap to convert that is the problem. Any
>> > suggestions?
>> > Thanks for any help.
>> > Cheers
>> > Larry
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>> ------------------------------
>>
>> End of STARLINK Digest - 23 Apr 2013 to 26 Apr 2013 (#2013-35)
>> **************************************************************
>>
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