Thanks Mike,
The problem still appears to be unsolved.
1) removed previous fsl version
$sudo apt-get remove fsl-5.0
$sudo apt-get autoremove
2) I have added the repositories
to
/etc/apt/sources.list
3) Installed the neurodebian-keyring package
4) Installed fsl package
$sudo apt-get install fsl
5) checked for the files in /usr/bin
pradeep@glia:~/hippo$ which fsl5.0-run_first_all
/usr/bin/fsl5.0-run_first_all
6) Test the program
pradeep@glia:~/hippo$ fsl5.0-run_first_all -i ****.img -o test
5970
exits with out generating the segmentation files.
Thanks,
Pradeep