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Hi Anders, 

You can use fslmeants with the --showall option and enter the one 3D volume as a mask. 

Hope that helps! 
Elizabeth

On Apr 21, 2013, at 11:01 PM, Anders Eklund wrote:

Dear experts,

is there any FSL function that calculates the mutual information between two volumes? Or even better, is there any function that takes one volume and one 4D dataset and returns a timeseries with the mutual information for each timepoint?

cheers,
Anders