This means you either don't have the most recent FSL or $FSLDIR/bin isn't in your path.

On 15 Apr 2013, at 10:45, Himanshu Joshi <[log in to unmask]> wrote:

After using the suggested  script, the time-series plot  for all components  is plotted mentioning the error
 


/bin/bash: slices_summary: command not found
Error using imread (line 369)
File "grot.png" does not exist.

Error in nets_pics (line 4)
picgood=imread('grot.png'); figure; imagesc(picgood); axis off; title('good components');

Error in myfslnets (line 33)
nets_pics(ts,group_maps);                % quick views of the good and bad components

On Mon, Apr 15, 2013 at 12:51 PM, Stephen Smith <[log in to unmask]> wrote:

On 15 Apr 2013, at 08:17, Himanshu Joshi <[log in to unmask]> wrote:

Hello lovely people,

I am using FSLNets for finding correlations among the spatial maps using nets_examples.m. I had copied it to another file named myfslnets.m, but while using the script I have  a confusion that What should we provide at ts_dir=GroupICA.dr ?

I am unable to find .dr file in my dual regression output directory.

I had a dual regression output directory containing all subjects time-series named
dr_stage1_subject00000.txt...dr_stage1_subject0001.txt..........till 20 subjects

I suppose I have to  provide the address of this  dualregression output folder like

ts_dir= '/home/mv/Desktop/Test/dualreg_output';

yes

I am not sure about this sign- ' is required or not in the script

Thanking you in anticipation

--
Himanshu Joshi
M.Tech. Cognitive & Neuroscience.
Ph.D Scholar
Senior Research Fellow
Department of Psychiatry
NIMHANS, Bangalore

http://mbial.weebly.com/himanshu-joshi.html

---------------------------------------------------------------------------
Stephen M. Smith, Professor of Biomedical Engineering
Associate Director,  Oxford University FMRIB Centre

FMRIB, JR Hospital, Headington, Oxford  OX3 9DU, UK
+44 (0) 1865 222726  (fax 222717)  2176
[log in to unmask]    http://www.fmrib.ox.ac.uk/~steve
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--
Himanshu Joshi
M.Tech. Cognitive & Neuroscience.
Senior Research Fellow
Department of Psychiatry
NIMHANS, Bangalore

http://mbial.weebly.com/himanshu-joshi.html

---------------------------------------------------------------------------
Stephen M. Smith, Professor of Biomedical Engineering
Associate Director,  Oxford University FMRIB Centre

FMRIB, JR Hospital, Headington, Oxford  OX3 9DU, UK
+44 (0) 1865 222726  (fax 222717)  2176
[log in to unmask]    http://www.fmrib.ox.ac.uk/~steve
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