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Ubuntu What does this mean exactly? What do I need to do to fix this? Thanks for your help! Cindy On 2013-04-02, at 1:28 AM, Stephen Smith wrote: Hi - it looks like you have an incomplete FSL distribution - is it debian/ubuntu? Steve. On 2 Apr 2013, at 01:34, Cindy HC wrote: Hi everyone, I am at the second part of my TBSS analysis. I have been following online info for preprocessing and now the analysis. I first ran tbss_1_preproc *.nii.gz and that went well. Now when I enter tbss_2_reg -T it gives me the following: Error: target image /usr/share/fsl/data/standard/FMRIB58_FA_1mm not valid Usage: tbss_2_reg [options] Target-selection options - choose ONE of: -T : use FMRIB58_FA_1mm as target for nonlinear registrations (recommended) -t <target> : use <target> image as target for nonlinear registrations -n : find best target from all images in FA I thought that -T automatically used FMRIB58_FA_1mm......if not how do I obtain this? Sorry for the simplicity of my question I am new to all this. Thanks in advance for the help. Cindy --------------------------------------------------------------------------- Stephen M. Smith, Professor of Biomedical Engineering Associate Director, Oxford University FMRIB Centre FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK +44 (0) 1865 222726 (fax 222717) [log in to unmask]<mailto:[log in to unmask]> http://www.fmrib.ox.ac.uk/~steve ---------------------------------------------------------------------------