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Maybe that might be the problem? Although the disk is formatted as FAT32. Top says the browser is most active (1% CPU and 10% memory use). Heidi ================================================ Dr. Heidi Jacobs Postdoc researcher Faculty of Health, Medicine and Life Sciences School for Mental Health and Neurosciences Division Cognitive Neuropsychiatry and Clinical Neurosciences Alzheimer Center Limburg [log in to unmask] www.maastrichtuniversity.nl www.heidijacobs.nl Dr. Tanslaan 12, 6229 ET Maastricht P.O. Box 616, 6200 MD Maastricht, The Netherlands T +31 43 38 84 090 F +31 43 38 84 092 ================================================ ________________________________________ Van: FSL - FMRIB's Software Library [[log in to unmask]] namens Stephen Smith [[log in to unmask]] Verzonden: dinsdag 9 april 2013 17:25 Aan: [log in to unmask] Onderwerp: Re: [FSL] problems creating symbolic links Hi - if your external drive is not unix-friendly you may have lots of problems using it for FSL. It's not clear from this though whether this is holding up your analysis - what program does "top" think is running? Cheers. On 9 Apr 2013, at 15:59, "Jacobs H (NP)" <[log in to unmask]<mailto:[log in to unmask]>> wrote: Dear FSL developers, I am running Melodic on an external hard drive (about 100 subjects), as this will make it easier for me to work from home on it. However in the log file it says: mkdir .files;cp /usr/share/fsl/4.1/doc/fsl.css .files;ln -s /usr/share/fsl/4.1/doc/images .files/images ln: creating symbolic link '*.files/images': operation not permitted Will this be a problem for my analyses? It is now running for 5 days and still did not do the registration (FNIRT; resampling 4mm). I am not sure if this could be normal or that maybe the upper error message is creating problem? Thanks Heidi ================================================ Dr. Heidi Jacobs Postdoc researcher Faculty of Health, Medicine and Life Sciences School for Mental Health and Neurosciences Division Cognitive Neuropsychiatry and Clinical Neurosciences Alzheimer Center Limburg [log in to unmask]<mailto:[log in to unmask]> www.maastrichtuniversity.nl www.heidijacobs.nl Dr. Tanslaan 12, 6229 ET Maastricht P.O. Box 616, 6200 MD Maastricht, The Netherlands T +31 43 38 84 090 F +31 43 38 84 092 ================================================ --------------------------------------------------------------------------- Stephen M. Smith, Professor of Biomedical Engineering Associate Director, Oxford University FMRIB Centre FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK +44 (0) 1865 222726 (fax 222717) [log in to unmask]<mailto:[log in to unmask]> http://www.fmrib.ox.ac.uk/~steve ---------------------------------------------------------------------------