I'm trying to run an analysis assessing if initial brain state has anything to do with how successful you are at doing a task either before or after training.  

I'm using FSL's GLM Setup GUI. 

I added my two covariates (pre) (post).
EV1: main effect 
EV2: pre test score 
EV3: post test score

Contrasts:
1: group mean (1, 0, 0) 
2: pre (0,1,0) -telling me if my pre-test scores have anything to do with initial brain state
3: post (0,0,1) -telling me if my post-test scores have anything to with initial brain state

Thank you,
Stephanie