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Thanks Mike, The problem still appears to be unsolved. 1) removed previous fsl version $sudo apt-get remove fsl-5.0 $sudo apt-get autoremove 2) I have added the repositories deb http://masi.vuse.vanderbilt.edu/neurodebian lucid main contrib non-free deb-src http://masi.vuse.vanderbilt.edu/neurodebian lucid main contrib non-free to /etc/apt/sources.list 3) Installed the neurodebian-keyring package 4) Installed fsl package $sudo apt-get install fsl 5) checked for the files in /usr/bin pradeep@glia:~/hippo$ which fsl5.0-run_first_all /usr/bin/fsl5.0-run_first_all 6) Test the program pradeep@glia:~/hippo$ fsl5.0-run_first_all -i ****.img -o test 5970 exits with out generating the segmentation files. Thanks, Pradeep On Wed, Apr 24, 2013 at 11:21 PM, Michael Hanke <[log in to unmask]>wrote: > Hi, > > On Thu, Apr 25, 2013 at 1:06 AM, Pradeep <[log in to unmask]> wrote: > >> Thank you for the reply Mike. It looks like some of the repositories are >> being blocked by our network firewall. Is there a way to download the >> package and install it offline? >> > > That is doable, but it is not pleasant. I don't know why your firewall > would block regular port 80 HTTP traffic, but maybe it helps if you switch > to another mirror server. We just updated the website and the installation > instructions, so if you visit > > http://neuro.debian.net/pkgs/fsl.html > > and click on the "Install this package" button. You can select another > mirror and try again. > > If that doesn't help, I'd recommend you talk to your local IT staff and > sort out the network issue. > > Cheers, > > Michael > > >